Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011583.1 Length=2797 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 7e-16 seq11 82.4 1e-12 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 208/305 (68%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 1728 CCCGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTAC 1787 || || ||||| || | ||| || || ||||| ||||| | || | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA- 89851259 Query 1788 TTTGTA-TTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTA 1846 |||| | || ||||| | ||| || || || || ||||| |||| |||| ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1847 --GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGA 1904 |||| ||| | |||||| |||| |||||| ||||||| | |||| ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1905 C--TAAGATCCAGGTGTCCACACAAGTAGTTGTGTGGACCCAAAGAGCGGGCCCACATCG 1962 | || |||| || ||||| | |||||| ||| |||||||| | |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1963 TCTTCCCCGTCCTACTATCGCCCTCGATGACGAT--ACTAGTAGGTCTCCATGGCCGCGC 2020 | || || ||||| ||| | || |||| || ||| | |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGC 89851495 Query 2021 AGCGG 2025 ||||| Sbjct 89851496 AGCGG 89851500 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 204/303 (67%), Gaps = 10/303 (3%) Strand=Plus/Minus Query 1728 CCCGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTAC 1787 || || ||||| || | ||| || || ||||| ||||| | || | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA- 165527545 Query 1788 TTTGTATTGCTT-TGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTA 1846 |||| | | ||||| | | ||| || || || || ||||| |||| ||| ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1847 --GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGA 1904 |||| ||| | |||||| |||| |||||| |||| ||| | |||| ||| Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1905 CTAAGATCCAGGTGTCCACACAAGTAGTTGTGTGGACCCAAAGAGCGGGCCCACATCGTC 1964 | | |||| || ||||| | |||||| ||| |||||||| | |||||||| || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1965 TTCCCCGTCCTACTATCGCCCTCGATGACGAT--ACTAGTAGGTCTCCATGGCCGCGCAG 2022 || | ||||| || || | |||| | ||| | |||||| |||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAG 165527309 Query 2023 CGG 2025 ||| Sbjct 165527308 CGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8838252288240