Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011804.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq13 109 1e-20 seq11 102 1e-18 >seq13 Length=197258317 Score = 109 bits (120), Expect = 1e-20 Identities = 207/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1674 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1733 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1734 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGGAAA 1793 || ||| || ||||| | ||| || || ||||||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1794 TGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGAC--CTTGGGAC 1851 || || | |||||| |||| ||| || ||||||| | |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1852 TCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAGTGATCTAGCCCACATCGTCT 1911 | ||||||| ||| ||||| | ||||||||| ||||| ||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1912 TCCCCGTACGACTGTCTCCTTCAATTACTAT--ACTTCGCGGTCTAAGGGGCCGCGCAGC 1969 | || || | || | ||| || | ||| |||| ||||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAGC 89851498 Query 1970 GG 1971 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 102 bits (112), Expect = 1e-18 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1674 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1733 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1734 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGGAAA 1793 || || || ||||| | | ||| || || ||||||||||| |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1794 TGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACCTTGGGACTC 1853 || || | |||||| |||| ||| || |||| ||| | |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1854 AGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAGTGATCTAGCCCACATCGTCTT 1912 |||||| ||| ||||| | ||||||||| ||||| ||||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659059417888