Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011805.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq13 113 8e-22 seq11 107 3e-20 >seq13 Length=197258317 Score = 113 bits (124), Expect = 8e-22 Identities = 208/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1677 CCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1736 || || |||||||| | ||||||||||||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1737 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1796 || ||| || ||||| | ||| || || || |||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1797 TGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGAC--CTTGGGAC 1854 || || | |||||| |||| ||| || ||||||| | |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1855 TCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCT 1914 | ||||||| ||| ||||| | ||||||||| |||||| || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1915 TCCCCGTACGACTATCTCCCTCAATTACTAT--ACTTCGAGGTCTAAGGGGCCGCGCAGC 1972 | || || | ||| | || || | ||| |||| ||||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAGC 89851498 Query 1973 GG 1974 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1677 CCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1736 || || |||||||| | ||||||||||||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1737 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1796 || || || ||||| | | ||| || || || |||||||| |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1797 TGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACCTTGGGACTC 1856 || || | |||||| |||| ||| || |||| ||| | |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1857 AGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCTT 1915 |||||| ||| ||||| | ||||||||| |||||| || || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649459573744