Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011919.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq16 102 1e-18 seq11 96.9 6e-17 seq13 95.1 2e-16 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 1713 CTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1772 |||| || ||||| || || | ||||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1773 TGAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACATCATCAATGACGTTGTACCACG 1832 || || || ||||||| | | || |||| || | |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1833 CATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACATAAATAGTTATGTGGGC 1892 |||| || | | || |||| | | |||| || ||||| |||||| |||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1893 CTAATGACCTAGCCCACATTGTTTTGCCAGT 1923 | ||||| || ||||||||||| || || || Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1679 CCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 || || ||||| || | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1739 TTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1798 ||| || || ||||| | | ||| || || || |||||||| |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1799 TGCGGGTCGACATCATCAATGACGTTGTACCACGCATCATTGCTGTACACTTTAGGGCTT 1858 || || | ||||| |||| |||||| || | || | | ||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1859 AGATCTAGATGACCACATAAATAGTTATGTGGGCCTAATGACCTAGCCCACATTGTTTTG 1918 | || | ||||||||||| ||||||||| || || || || ||||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1919 C 1919 | Sbjct 165527363 C 165527363 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 173/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 1679 CCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 || || ||||| || | |||||| ||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1739 TTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1798 ||| ||| || ||||| | ||| || || || |||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1799 TGCGGGTCGACATCATCAATGACGTTGTA--CCACGCATCATTGCTGTACACTTTAGGG- 1855 || || | ||||| |||| |||||| | ||| || || | | ||||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1856 CTT-AGATCTAGATGACCACATAAATAGTTATGTGGGCCTAATGACCTAGCCCACATTGT 1914 ||| || || | ||||||||||| ||||||||| || || || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1915 TTTGCCAGT 1923 ||| || || Sbjct 89851439 TTTACCTGT 89851447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416