Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012041.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq16 123 4e-25 seq13 80.6 5e-12 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 191/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1718 CTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGTCCTTTTGGGACCCCA 1777 |||| || ||||| || || | |||||| |||| ||||||||| |||| | || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1778 TGAATTCCTTAAAGTGCTTTAAGTAGTGGGGATCGACGTCGTCGATGACGTTATA--CCA 1835 |||||||| |||| ||||| | || || | |||| || || |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1836 TGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGCCCGCGTAAATAGTTGTGTGG 1895 |||| || | ||||| ||||| ||||||| | || || | |||||| || ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1896 GCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCTCCCTCAATTACTATACT 1955 || || || || |||||||||||||| || || | ||| || ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1956 TTGAGGTCTCAGGGGCCGCGCAGCGGCGTCG 1986 |||||||||| || || | |||| |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065 >seq13 Length=197258317 Score = 80.6 bits (88), Expect = 5e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 2249 TCTGAAATTGGCCCCATTCGAGAATGTCCCCGTCCTTGTCGATGTAGGACTTGACGTCGG 2308 ||||||| ||||| |||| ||||| ||||| || | || || ||||| | Sbjct 89851771 TCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGA 89851830 Query 2309 AGCTGGTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGG-GATGTG 2367 | |||| |||||| ||| || || ||||| || | | ||| | |||||| ||| || Sbjct 89851831 AACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGAT-TG 89851889 Query 2368 AGGTCGAAGAATCTGTTGTTTTGGCACTTGTATTTTCCTTCG-AAT-TGGATGAGAACAT 2425 | ||| |||||||| ||||| || || ||||| || ||| || || | ||||| Sbjct 89851890 ATGTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACAT 89851949 Query 2426 GCAGGTGAGGAGTCCCATCTTCGTGGAGTTCTCTGCAGAT 2465 | || ||||| | | |||||||| | |||||||||||| Sbjct 89851950 GTAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGAT 89851989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713458534704