Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012118.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 86.0 1e-13 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 185/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1727 CTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1786 |||| || ||||| || |||| ||| || || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1787 TGAATTCTTTGAAGTGCTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTA--CCA 1844 ||||| || |||| |||| | | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1845 GGCCTCATTACTGTAGACCTTTGGACTAAGGTCTAAGTGACCACACAAATAATTATGTGG 1904 | || ||| | | ||| | ||| | | |||||| | ||||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1905 ACCCAGTGACCTAGCCCACATCGTCTTCCCCGTACGACTATCGCCCTCTATGACAATACT 1964 |||| ||| || |||||||| ||||| || || | ||| || || || | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1965 TTTAGGTCTCAATGGCCGCGCAGCG 1989 | |||||||||||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 86.0 bits (94), Expect = 1e-13 Identities = 203/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1692 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1752 TTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGATA 1811 ||| ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1812 ATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGTAGACCTTTGGAC- 1870 || || | |||||| |||| |||||| | || || | |||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1871 -TAAGGTCTAAGTGACCACACAAATAATTATGTGGACCCAGTGACCTAGCCCACATCGTC 1929 | ||||| | |||||||| | || |||||| |||| || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1930 TTCCCCGTACGACTATCGCCCTCTATGACAAT--ACTTTTAGGTCTCAATGGCCGCGCAG 1987 || || || | ||| | ||||||| || ||||| ||||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1988 CGGC 1991 |||| Sbjct 89851498 CGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732654053080