Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012137.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 116 6e-23 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 183/257 (71%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 1714 CTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCA 1773 |||| || ||||| || |||| ||| || || | |||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1774 TGAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTA--CCA 1831 || || || ||||||| | | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1832 GGCGTCGTTACTGTATACTTTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGG 1891 | |||||| | | || | ||| ||| ||| | || || | ||||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1892 TCCCAATGATCTAGCCCACATCGTCTTCCCCGTTCGACTATCTCCCTCAATTACTATACT 1951 |||||||||||| |||||||| ||||| || |||| ||| || ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1952 CCGAGGTCT-AAGGGGC 1967 | ||||||| || |||| Sbjct 2249095 CTGAGGTCTCAATGGGC 2249079 >seq13 Length=197258317 Score = 116 bits (128), Expect = 6e-23 Identities = 207/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1680 CCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1739 || || ||||| || | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1740 TTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1799 || ||| |||||||| | | ||| || || || |||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1800 TGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACTTTGGGAC-- 1857 || || | |||||| |||| |||||| ||||||| | | ||||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1858 TCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGATCTAGCCCACATCGTCT 1917 | ||||||| ||| || || | ||||||||| |||||| ||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1918 TCCCCGTTCGACTATCTCCCTCAATTACTATACTCCGAGGTCTAAGGGGCCGCGCAGCGG 1977 | || || | ||| | || || | ||| | ||||| | ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1978 C 1978 | Sbjct 89851501 C 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719858430800