Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012206.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq13 129 1e-26 seq16 98.7 2e-17 seq11 84.2 4e-13 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 239/349 (68%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 2275 TCTTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGTGTATCTCCATCCTTGTC 2334 ||| | |||| | |||| |||| ||| ||||| |||| | ||| || || || | Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2335 GATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGC 2394 ||||| |||| | | ||||||||||| |||||||| |||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2395 TGACCTGGTTGGGGACACCAGGTCGAAGAATCTCTGATTTTGGCAGTTGTATTTGCCTTC 2454 ||| | ||||| ||||| |||||||| ||||||| || ||| |||| ||| Sbjct 172134441 AGACGTATTTGGGTGATTGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTC 172134500 Query 2455 GAACTGCAGAAGCACGTGAAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAGATCTT 2514 | ||||| | || ||||||||||||| | | || ||||| |||||| ||||||| Sbjct 172134501 CATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGC 172134560 Query 2515 GATATAT-TTTTTATTCGTT---GGGGTTTCTAGTTTTAGAAGTTGCTCTAGGGCTTCTT 2570 ||||||| | || ||| | || || ||| | ||||| || || | || Sbjct 172134561 GATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATATT 172134620 Query 2571 CTTTAGAAATAGAGCATTTTGGGAAAGTGAGGAAGTAGTTTTTGGAATT 2619 |||| || | | ||||||||||| | |||| ||||||||| |||| ||| Sbjct 172134621 CTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCATT 172134669 Score = 86.0 bits (94), Expect = 1e-13 Identities = 200/301 (66%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1730 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1789 ||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1790 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTGAAGTGTTTGAGGTAA 1849 ||| ||| ||||| | | ||| || || ||||| ||||| |||| |||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1850 TGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGGC-- 1907 || || | |||||| |||| ||| || | | || ||||| | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1908 TAAGATCAAGATGCCCACACAAGTAATTGTGTGGACCTAATGACCTAGCCCACATCGTCT 1967 | || || | ||| ||||| | ||| || ||| || || || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1968 TGCCGGTACGACTATCACCCTCAATAACAATACTATTCGGTCTCCATGGCCGCGCAGCGG 2027 | || || | ||||| || || | || || |||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 2028 C 2028 | Sbjct 89851501 C 89851501 Score = 78.8 bits (86), Expect = 2e-11 Identities = 157/232 (68%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 2295 TCTGGAACTCTCCCCATTCGAGTGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGG 2354 |||| ||| |||||| |||| | | || || || || | || || ||||| | Sbjct 89851771 TCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGA 89851830 Query 2355 AGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGACACCA 2414 | ||||||||||| |||||| |||||||| || | | ||| | ||||| | Sbjct 89851831 AACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGATTGA 89851890 Query 2415 GGTCGAAGAATCTCTGATTTTGGCAGTT--GTATTTGCCTTCGAACTGCAGAAGCACGTG 2472 ||| |||||||| ||||||| || || | ||| ||| | ||||| | || || Sbjct 89851891 TGTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACATG 89851950 Query 2473 AAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAGATCTTGATATATTTT 2524 |||||||| | | || ||||| | |||||||||||| |||||| ||| Sbjct 89851951 TAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGATGGCGATATACTTT 89852002 >seq16 Length=188620566 Score = 98.7 bits (108), Expect = 2e-17 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1764 CTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1823 |||| || |||| || || | ||||||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1824 TAAATTCTTTGAAGTGTTTGAGGTAATGGGGATCGACGTCATCAATGACGTTATA--CCA 1881 ||||| || ||||||| | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1882 AGCATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACACAAGTAATTGTGTGG 1941 |||| || || | ||| | || | | || | || |||| || ||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1942 ACCTAATGACCTAGCCCACATCGTCTTGCCGGTACGACTATCACCCTCAATAACAATACT 2001 || ||||| || |||||||| ||||| ||||| | |||||| ||||| | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 2002 ATTCGGTCTCCATGGCCGCGCAGCG 2026 | |||||| |||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 198/299 (66%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1730 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1789 ||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1790 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTGAAGTGTTTGAGGTAA 1849 ||| || ||||| | || ||| || || ||||| ||||| |||| ||| ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1850 TGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGGCTA 1909 || || | |||||| |||| ||| || ||| | ||||| | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1910 AGATCAAGATGCCCACACAAGTAATTGTGTGGACCTAATGACCTAGCCCACATCGTCTTG 1969 | || | ||| ||||| | ||| || ||| || || || || |||||||| || ||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1970 CCGGTACGACTATCACCCTCAATAACAATACTATTCGGTCTCCATGGCCGCGCAGCGGC 2028 | || | || ||| | || | | || |||||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796652983480