Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012481.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq13 163 5e-37 seq11 158 2e-35 seq16 150 3e-33 >seq13 Length=197258317 Score = 163 bits (180), Expect = 5e-37 Identities = 270/387 (70%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 1532 CTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGT 1591 ||||||| ||||| || | ||||| ||||||||| ||||| | || ||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1592 ACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAGCTCTTTCCAGTGCTTTAGCT 1651 | || ||||| || ||||| | ||| || || || | ||||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1652 TTAAATAATGCGGAGCTATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGAC-- 1709 | || || || || | ||||||||| |||| ||| || || || || || |||||||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1710 CTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGTGCCCA 1769 || |||| ||| | ||||||| | || |||||| || |||| | |||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1770 CATGGTTTTGCCTGTTCGTGAACCTCCTTCAATTATGAT--ACTAATAGGTCTCTCCGGC 1827 ||| ||||| ||||| | ||| | | ||| || || || ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1828 CGCGCAGCGGAACTCCGACCAAAATATTCATATGCCCATGAACTCATCTCGTCCGGGACG 1887 |||||||||| | ||||| ||| || ||||||| | || || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1888 TTAGTAAAGGAGGAGAGTTGGAACGGA 1914 ||||| ||| || | | |||| ||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGA 89851577 Score = 86.0 bits (94), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 1649 GCTTTAAATAATGCGGAGCTATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGA 1708 |||| || || || || | ||||||||| |||| ||| || || | | || ||||||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1709 CCTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGTGCCC 1768 | || |||| ||| | || |||| | || |||||| || | | | ||||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1769 ACATGGTTTTGCCTGTTCGTGAACCTCCTTCAATTATGATACTAA--TAGGTCTCTCCGG 1826 |||| ||||||||||||| ||| ||||| || || |||| | | |||||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1827 CCGCGCAGCGGAACTCCGACCAAAATATTCATATGCCCAT 1866 ||| ||||||| |||||| ||| || ||||||| Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCAT 172134099 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 242/344 (70%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 1528 CCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTG 1587 ||| ||||||| ||||| |||| ||||| ||||||||| ||||| | || ||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1588 CCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAGCTCTTTCCAGTGCTTT 1647 ||||| || |||| || ||||| | | ||| || || || | ||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1648 AGCTTTAAATAATGCGGAGCTATGTCATCAATGACGTTATACTCCACATCATTCGAGAAG 1707 || | || || || || | ||||||||| |||| ||| || || | | || |||||| Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1708 ACCTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGTGCC 1767 || || ||| ||| | ||||||| | || |||||| || |||| | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1768 CACATGGTTTTGCCTGTTCGTGAACCTCCTTCAATTATGAT-----ACTAATAGGTCTCT 1822 ||||| ||||||| ||| | ||| |||| ||||||| ||| | |||||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCTCA 165527321 Query 1823 CCGGCCGCGCAGCGGAACTCCGACCAAAATATTCATATGCCCAT 1866 |||||||||||||| ||||||| ||| || ||||||| Sbjct 165527320 TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCAT 165527277 >seq16 Length=188620566 Score = 150 bits (166), Expect = 3e-33 Identities = 217/302 (72%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 1568 CTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTA 1627 |||| || ||||| || || | |||||| || |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1628 TGAGCTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCTATGTCATCAATGACGTTAT 1687 | || |||||||| |||| || | || || | || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTA------AACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1688 ACTCCACATCATTCGAGAAGACCTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTAT 1747 | |||||||| || ||||| ||| | | ||| ||||| | | |||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1748 GTGGGCCTAAAGCACGTGCCCACATGGTTTTGCCTGTTCGTGAACCTCCTTCAATTATGA 1807 || || || | | ||||||||| || || || |||| |||| | ||||||||||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1808 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCCGA-CCAAAATATTCATATGCCC 1864 | ||| ||||||| || || | ||| | || || |||||| |||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 1865 AT 1866 || Sbjct 2249042 AT 2249041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201466847024