Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012492.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 3e-14 seq11 78.8 2e-11 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 203/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1687 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGCATGGGCTTCCCGTAC 1746 ||||| ||||| || | ||| || || || || ||||| | | | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1747 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTTAGATAG 1806 || ||| ||||| | ||| || || || ||||| || ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1807 TGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGAC-- 1864 || || | |||||| |||| |||||| | || || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1865 TCAGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCT 1924 | ||||| | |||||||||| ||||||||| |||| ||| || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1925 TCCCTGTTCTACTCTCACCCTCTATGACTATACTGACG--GGTCTCCAAGGCCGCGCAGC 1982 | ||||| || |||| ||||||| ||| |||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1983 GGC 1985 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 78.8 bits (86), Expect = 2e-11 Identities = 199/301 (66%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1687 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGCATGGGCTTCCCGTAC 1746 ||||| ||||| || | ||| || || || || ||||| | | | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1747 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTTAGATAG 1806 || || ||||| | | ||| || || || ||||| || ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1807 TGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTC 1866 || || | |||||| |||| |||||| || | || | | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1867 AGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTC 1926 |||| | |||||||||| ||||||||| |||| ||| || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1927 CCTGTTCTACTCTCACCCTCTATGACTATACTGACG--GGTCTCCAAGGCCGCGCAGCGG 1984 | ||| || | ||| | ||||| | | |||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 1985 C 1985 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697458794464