Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012553.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq13 114 2e-22 seq11 102 1e-18 >seq13 Length=197258317 Score = 114 bits (126), Expect = 2e-22 Identities = 243/360 (68%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 1578 CCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCATAT 1637 ||||| ||||| || | ||||| |||||| || ||||| | || ||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1638 TTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGCTTTAACTTT 1697 || ||||| |||||||| | ||| || ||||| ||||||||||| ||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1698 AGATAATGCGGAGCGACATCATCAATGACGTTATACTCAACGTCATTTGAGTAAAC--CC 1755 || || || | | ||||| |||| ||| || |||||||| |||||| | || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1756 TAGAATTGAAATCGAGATGCCCACTAAGATAATTATGTGGGCCTAAAGCTCTAGCCCACA 1815 | |||| || | ||| |||| | || |||||| || |||| ||| ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1816 TGGTCTTTCCCGTTCGACTATCCCCCTCGACTACAAT--ACTAATAGGTCTCTCTGGCCG 1873 | || || || || | ||| | || | | || ||| | |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1874 CGCAGCGGCACCCCTTCCAAAATAAACATCAGCCCACTCTTGCAAATCGTCCGGGACATT 1933 ||||||||| |||||| || ||| ||||| | ||||| || || || ||||| Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 >seq11 Length=168460249 Score = 102 bits (112), Expect = 1e-18 Identities = 173/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 1572 CCCTCGCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTT 1631 ||| | ||||| ||||| |||| ||||| |||||| || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1632 CCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGCTTT 1691 || ||||| |||| |||||||| | | ||| || ||||| ||||||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1692 AACTTTAGATAATGCGGAGCGACATCATCAATGACGTTATACTCAACGTCATTTGAGTAA 1751 || || || || | | ||||| |||| ||| || ||| ||| |||||| | Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1752 ACCCTAGAATTGAAATCGAGATGCCCACTAAGATAATTATGTGGGCCTAAAGCTCTAGCC 1811 || | ||| || | ||| |||| | || |||||| || |||| ||| ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1812 CACATGGTCTT 1822 ||||| || || Sbjct 165527375 CACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8239866223600