Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012664.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq13 102 1e-18 seq16 91.5 3e-15 seq11 86.0 1e-13 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 190/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 1752 GTTACAGAGCACGATAGCTGGTTTACCACCTTTAACCAGAACCGGTTTCCCATATTTCAG 1811 ||| || || | ||| | |||| | || ||||| || ||| || || | ||||| Sbjct 89851206 GTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCA 89851265 Query 1812 GTTACTTTGCCAGTCTTTCTGAGCTCCTAGAAACTCCTTCCAATGCTTTAGATATTTAGG 1871 |||| ||||| | || |||||||| | |||||| ||||| ||||| | |||| || Sbjct 89851266 GTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTATTGTGG 89851325 Query 1872 GGTGACGTCATCGATGACGTTGTAACTTGCCTCGTTGTCGAATACGGCTCC--GTTGAGG 1929 | | ||||||||||| ||||||| | ||||| ||| || | | |||||| Sbjct 89851326 TGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGG 89851385 Query 1930 TCCAGATGTCCGCTGAGATAGTTGTGACGGCCCAATGATCTAGCCCAAGCCGTTTTTCCT 1989 |||| ||| || | | ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 89851386 TCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCT 89851445 Query 1990 GTACGGGAATCACCCTCAATTATCAATGATAATGGTCT 2027 || | |||||||| || || || | ||| |||||| Sbjct 89851446 GTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCT 89851483 >seq16 Length=188620566 Score = 91.5 bits (100), Expect = 3e-15 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 1781 CTTTAACCAGAACCGGTTTCCCATATTT-CAGGTTACTTTGCCAGTCTTTCTGAGCTCCT 1839 |||| | | |||||||||| | || || || || ||| |||||||| | || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1840 AGAAACTCCTTCCAATGCTTTAGATATTTAGGGGTGACGTCATCGATGACGTTGTAACTT 1899 || || |||||||| || |||| | ||| ||| | |||| ||| || ||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1900 GCCTCGTTGTCGAATACGGCTCCGTTGAGGTCCAGATGTCCGCTGAGATAGTTGTGACGG 1959 | ||||| ||| || | || | ||| | || || || | ||| || || | Sbjct 2249214 ACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTT 2249155 Query 1960 CCCAATGATCTAGCCCAAGCCGTTTTTCCTGTACGGGAATCACCCTCAATTATCAATGA 2018 ||||||||||| ||||| || ||||| || | |||||||| |||||||| | ||| Sbjct 2249154 CCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 >seq11 Length=168460249 Score = 86.0 bits (94), Expect = 1e-13 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1752 GTTACAGAGCACGATAGCTGGTTTACCACCTTTAACCAGAACCGGTTTCCCATATTTCAG 1811 ||| || |||| ||| | |||| | || ||||| | ||| || || || ||||| Sbjct 165527598 GTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTATTTGCA 165527539 Query 1812 GTTACTTTGCCAGTCTTTCTGAGCTCCTAGAAACTCCTTCCAATGCTTTAGATATTTAGG 1871 || | ||||| | | |||||||| | |||||| ||||| ||| | | |||| || Sbjct 165527538 GTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTATTGTGG 165527479 Query 1872 GGTGACGTCATCGATGACGTTGTAACTTGCCTCGTTGTCGAATACGGCTCCGTTGAGGTC 1931 | | ||||||||||| |||||| || | ||| ||| || | |||| |||| Sbjct 165527478 TGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGTGGTC 165527419 Query 1932 CAGATGTCCGCTGAGATAGTTGTGACGGCCCAATGATCTAGCCCAAGCCGTTTTTCCTGT 1991 || ||| || | | ||||| || | ||||| ||||| ||||| ||||| | ||| Sbjct 165527418 CATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTGCTTGT 165527359 Query 1992 ACGGGAATCACC 2003 | ||||| ||| Sbjct 165527358 CCTGGAATTACC 165527347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560