Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012665.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq13 123 4e-25 seq11 109 1e-20 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 212/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1673 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1732 || || |||||||| | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1733 TTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAA 1792 || ||| |||||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1793 TGCGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTTGCTGTAGACTTTGGGA-CT 1851 || || | |||||| |||| ||| || | ||||||| | ||||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1852 T-AGGTCTAGATGGCCACACAAATAGTTATGTGGACCTAGTGACCTCGCCCACATCGTCT 1910 | ||||| | ||| ||||| | ||||||||| || | || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1911 TCCCGGTCCGACTATCTCCCTCAATAACTAT--ACTTTGAGGTCTCAGGTGCCGCGCAGC 1968 | || |||| ||| | || || | ||| |||||| |||||| |||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCAGC 89851498 Query 1969 GGC 1971 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 109 bits (120), Expect = 1e-20 Identities = 206/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1673 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1732 || || |||||||| | |||||| ||||| || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1733 TTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAA 1792 || || |||||||| | | ||| || || || |||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1793 TGCGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTTGCTGTAGACTTTGGGACTT 1852 || || | |||||| |||| ||| || ||||| ||| | ||||||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1853 AGGTCTAGATGGCCACACAAATAGTTATGTGGACCTAGTGACCTCGCCCACATCGTCTTC 1912 |||| | ||| ||||| | ||||||||| || | || || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1913 CCGGTCCGACTATCTCCCTCAATAACTAT--ACTTTGAGGTCTCAGGTGCCGCGCAGCGG 1970 | |||| || || | || | | | |||||| |||||| |||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTG--GTCTCATCGGCCGCGCAGCGG 165527306 Query 1971 C 1971 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668659262032