Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_012786.1 Length=2672 Score E Sequences producing significant alignments: (Bits) Value seq16 147 4e-32 seq13 129 1e-26 seq11 118 2e-23 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 177/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1636 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAA 1695 |||| || ||||| || |||| ||| || || || | |||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1696 TGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGTGGGCTAATGTCATCAATGACGTTAT 1755 | |||||||||||| ||| | | | |||||| ||| || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTG------TTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1756 ATTCCACGTCATTTGAATAAACCCTGGAATTGAAATCCAAGTGTCCACTAAGATAATTAT 1815 ||||||| || || || ||||| | | ||| || || || | ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1816 GGACTCCTAATGAACGAGCCCACATTGTCTTCCCCGTTCGACTATCACCCTCGATGATAA 1875 | ||| ||||| | |||||||||||||| || |||| |||||| || || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1876 T 1876 | Sbjct 2249099 T 2249099 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 253/368 (69%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 1602 CCTGGATTACAGAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1661 ||||| || || || | ||||| || | || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1662 TTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTC 1721 || ||||| |||||||| | ||| || ||||| | || ||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1722 AGATAATGTGGGCTAATGTCATCAATGACGTTATATTCCACGTCATTTGAATAAACCCTG 1781 || || ||||| |||||||| |||| ||| || || ||||| ||||| | || | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1782 GAAT--TGAAATCCAAGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACA 1839 | ||| |||| || |||| | || ||||| ||| || || | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1840 TTGTCTTCCCCGTTCGACTATCACCCTCGATGATAAT--ACTAATAGCTCGTTCA--GGC 1895 |||| || || || | ||||| || ||||| || ||| | | || ||| ||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTC--TCATCGGC 89851490 Query 1896 CGCGCAGCGGCATCAAGCCCAAAATATGAATCAGCCCACTCTTGCATCTCCTCTGGAACA 1955 ||||||||||| | || ||||| |||||||| ||||| | ||||| || ||||| ||| Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1956 AGAGTGAA 1963 |||||| Sbjct 89851551 TTAGTGAA 89851558 Score = 82.4 bits (90), Expect = 1e-12 Identities = 226/343 (66%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 1737 ATGTCATCAATGACGTTATATTCCACGTCATTTGAATAAACCCTGGAATTGAAATCCAAG 1796 |||||||| |||| ||| || || ||| ||||| | || | |||| ||||| Sbjct 172133903 ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAAT 172133962 Query 1797 TGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTTCCCCGTTCGA 1856 || |||| | || ||||| ||| | || | ||||||||||| || || |||| Sbjct 172133963 TG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTG 172134021 Query 1857 CTATCACCCTCGATGATAATACTAA--TAGCTCGTTCAGGCCGCGCAGCGGCATCAAGCC 1914 || ||| || ||||| |||| | | | || | ||||| |||||||| | | | Sbjct 172134022 GAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATAC 172134079 Query 1915 CAAAATATGAATCAGCCCACTCTTGCATCTCCTCTGGAACAAGAGTGAATGAGGAGAGGG 1974 |||| |||||||| ||||| ||||||| || ||| | ||| |||||| || | | Sbjct 172134080 CAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAGCTTGATAACG 172134139 Query 1975 GAAACGGAGGAACAAACGGTTCTGGAGCCTTTTGAAAAATGCGTTCTAAATTTGAACGGA 2034 | || ||| || | || ||| || ||| | | | | || | || | || Sbjct 172134140 GGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGACTCTATCCAGGTTGAAGTTGA 172134199 Query 2035 TATTATGATGTTGAAGGACAAAATCTTTGGGTTGTTCCTCTCT 2077 | || ||||| || | || ||| ||| |||||||||| ||||| Sbjct 172134200 TGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATCTCT 172134242 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 249/366 (68%), Gaps = 14/366 (4%) Strand=Plus/Minus Query 1602 CCTGGATTACAGAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1661 ||||| || || |||| ||||| || | || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1662 TTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTC 1721 || |||| |||||||| | | ||| || ||||| | || ||||||||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGA----- 165527489 Query 1722 AGATAATGTGGGCTAATGTCATCAATGACGTTATATTCCACGTCATTTGAATAAACCCTG 1781 || || ||||| |||||||| |||| ||| || || ||| ||||| | || | Sbjct 165527488 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1782 GAATTGAAATCCAAGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATT 1841 ||| |||| || |||| | || ||||| ||| || || | ||||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1842 GTCTTCCCCGTTCGACTATCACCCTCGATGATAAT--ACTAATAGCTCGTTCA--GGCCG 1897 || || | || | || ||| | ||||| | ||| | | || ||| ||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTC--TCATCGGCCG 165527314 Query 1898 CGCAGCGGCATCAAGCCCAAAATATGAATCAGCCCACTCTTGCATCTCCTCTGGAACAAG 1957 ||||||||| | || ||||| |||||||| ||||| ||||||| || ||||| ||| Sbjct 165527313 CGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATT 165527254 Query 1958 AGTGAA 1963 |||||| Sbjct 165527253 AGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8441462950624