Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013017.1 Length=2386 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 3e-14 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 1373 CTTTAATTTGAACCGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCA 1432 |||| || ||||||||||| | ||| || || ||||||||| |||||||||| | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1433 TGAACTCCTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCTATGACGTTATA--CCA 1490 || ||||| ||||||| | | | || |||| ||| | ||| || |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1491 TGCGTCATTACTGAACACCTTTGGGCTCAGATCAAGATGGCCGCACAGATAATTATG-AG 1549 | || ||| ||| ||| | || ||| || | || || | | ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1550 GCCCAA-GACTTCTGGCCCATACGGTCTTCCCTGTTCTGCTTTCTCCTTCAATCACTAT 1607 ||||| || ||| ||||| | ||||| || ||||| || |||||||| | ||| Sbjct 2249155 TCCCAATGA--TCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTAT 2249099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7526277808896