Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013022.2 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 3e-15 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 208/307 (68%), Gaps = 12/307 (4%) Strand=Plus/Minus Query 1711 CTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGT 1770 ||||||| ||||| || | ||| || ||||| || ||||| | || |||||| |||| Sbjct 165527605 CTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGT 165527546 Query 1771 ATTTACAATTGCTTTGCCAGTCCTTC--TGGGCCCCCATGAACTCTTTAAAGTGCTTTAG 1828 |||| || | ||||| | ||| || || || || |||||||| ||||| | | Sbjct 165527545 ATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAA 165527488 Query 1829 GTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTTTGG 1888 |||||| || | |||||| |||| ||| || ||| |||| | || ||| Sbjct 165527487 GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 1889 ACTCAGGTCCAAATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGCCCAAACTGT 1948 | |||||| ||| ||||| | || |||||| ||| || ||||| ||||| | ||| Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 1949 TTTACCTATTCT--ACTTGGCCCTTCTATAACTAT--ACTTATGGGCCTCTCTGGCCGCG 2004 ||| | | | || | || |||| ||| | | | |||| || ||| ||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTA--CCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCG 165527312 Query 2005 CAGCGGC 2011 ||||||| Sbjct 165527311 CAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8819052609120