Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013413.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq16 102 1e-18 seq13 96.9 6e-17 seq11 87.8 3e-14 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 185/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1718 CTTTAATTTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCA 1777 |||| || |||| || |||| |||||| || |||||| || || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1778 TGAACTCTTTAAAGTGTTTTAGGTAATGCGGGTCGACGTCATCAATGACGTTATA--CCA 1835 || || || ||||||||| | || |||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1836 AGCATCATTGCAATACACCTTTGGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCT 1895 |||| || | | ||| | ||| | | || | || || | || |||||||| || Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1896 ACCAAGAGATCTTGCCCACATGGTTTTACCAGTTCTAGAAGCACCTTCAATCACAAT--A 1953 || | |||||||||||||| || || || ||||| ||| |||||||||| | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1954 CTTATGGGCCTCCATGGCCGCGCAGCG 1980 || | || ||| |||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743 ||||| ||||| || | ||| || || ||||| ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAA 1803 || ||| ||||||| || || || || |||||||| |||| || | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1804 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGAC-- 1861 || || | |||||| |||| ||| || | | || || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1862 TAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTT 1921 | || || | ||| || || | ||| ||||| | || | ||||||||||||||| |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1922 TACCAGTTCTAGAAGCACCTTCAATCACAAT--ACTTATGGGCCTCCATGGCCGCGCAGC 1979 |||| || || ||| ||| ||| || | || ||| | || ||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498 Query 1980 GGC 1982 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743 ||||| ||||| || | ||| || || ||||| ||||| | || ||||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAA 1803 || || ||||||| | || || || || |||||||| |||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1804 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGACTA 1863 || || | |||||| |||| ||| || ||| | || | | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1864 AGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTTTA 1923 | || | ||| || || | ||| ||||| || || | ||||||||||||||| ||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1924 CCAGTTCTAGAAGCACCTTCAATCACAAT--ACTTATGGGCCTCCATGGCCGCGCAGCGG 1981 | || || ||| ||||| || | | ||| | || ||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 1982 C 1982 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416