Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_013413.1
Length=2751
Score E
Sequences producing significant alignments: (Bits) Value
seq16 102 1e-18
seq13 96.9 6e-17
seq11 87.8 3e-14
>seq16
Length=188620566
Score = 102 bits (112), Expect = 1e-18
Identities = 185/267 (69%), Gaps = 8/267 (3%)
Strand=Plus/Minus
Query 1718 CTTTAATTTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCA 1777
|||| || |||| || |||| |||||| || |||||| || || || || || |
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1778 TGAACTCTTTAAAGTGTTTTAGGTAATGCGGGTCGACGTCATCAATGACGTTATA--CCA 1835
|| || || ||||||||| | || |||| |||| |||||| |||||||| |||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214
Query 1836 AGCATCATTGCAATACACCTTTGGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCT 1895
|||| || | | ||| | ||| | | || | || || | || |||||||| ||
Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156
Query 1896 ACCAAGAGATCTTGCCCACATGGTTTTACCAGTTCTAGAAGCACCTTCAATCACAAT--A 1953
|| | |||||||||||||| || || || ||||| ||| |||||||||| | || |
Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096
Query 1954 CTTATGGGCCTCCATGGCCGCGCAGCG 1980
|| | || ||| |||| || | ||||
Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071
>seq13
Length=197258317
Score = 96.9 bits (106), Expect = 6e-17
Identities = 205/303 (68%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743
||||| ||||| || | ||| || || ||||| ||||| | || ||||||| ||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAA 1803
|| ||| ||||||| || || || || |||||||| |||| || | |||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320
Query 1804 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGAC-- 1861
|| || | |||||| |||| ||| || | | || || | | || |||
Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380
Query 1862 TAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTT 1921
| || || | ||| || || | ||| ||||| | || | ||||||||||||||| ||||
Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440
Query 1922 TACCAGTTCTAGAAGCACCTTCAATCACAAT--ACTTATGGGCCTCCATGGCCGCGCAGC 1979
|||| || || ||| ||| ||| || | || ||| | || ||| |||||||||||
Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498
Query 1980 GGC 1982
|||
Sbjct 89851499 GGC 89851501
>seq11
Length=168460249
Score = 87.8 bits (96), Expect = 3e-14
Identities = 201/301 (67%), Gaps = 4/301 (1%)
Strand=Plus/Minus
Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743
||||| ||||| || | ||| || || ||||| ||||| | || ||||||| |||||
Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544
Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAA 1803
|| || ||||||| | || || || || |||||||| |||| | | |||
Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484
Query 1804 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGACTA 1863
|| || | |||||| |||| ||| || ||| | || | | || ||| |
Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424
Query 1864 AGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTTTA 1923
| || | ||| || || | ||| ||||| || || | ||||||||||||||| |||||
Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364
Query 1924 CCAGTTCTAGAAGCACCTTCAATCACAAT--ACTTATGGGCCTCCATGGCCGCGCAGCGG 1981
| || || ||| ||||| || | | ||| | || ||| |||||||||||||
Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306
Query 1982 C 1982
|
Sbjct 165527305 C 165527305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8694258846416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |