Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013465.1 Length=2807 Score E Sequences producing significant alignments: (Bits) Value seq11 107 3e-20 seq13 104 4e-19 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 214/314 (68%), Gaps = 5/314 (2%) Strand=Plus/Minus Query 1715 ATGAAGAGCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAA 1774 ||||| | ||| ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 165527616 ATGAAAA-CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGAC 165527558 Query 1775 CTGGCTTCCCGTATTTACAGTTTGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTT 1832 |||||| |||||||| |||| || ||||| | ||| || || || || || || || Sbjct 165527557 TTGGCTTGCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTT 165527500 Query 1833 AAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCT 1892 ||||| | | |||||| || | |||||| |||| ||| || ||| |||| Sbjct 165527499 CCAGTGCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGA 165527440 Query 1893 GTATACTTTTGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCT 1952 | | |||||| | | | || | ||| ||||| | || || || |||||||| || Sbjct 165527439 GAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCT 165527380 Query 1953 GGCCCACACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATTGATATAGGTCTATC 2012 ||||||| |||||||| | | ||| |||| || | |||| | ||||| Sbjct 165527379 TGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCAT 165527320 Query 2013 CGGCCGCGCAGCGG 2026 |||||||||||||| Sbjct 165527319 CGGCCGCGCAGCGG 165527306 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 213/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 1715 ATGAAGAGCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAA 1774 ||||| | || ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 89851187 ATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGAC 89851246 Query 1775 CTGGCTTCCCGTATTTACAGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAA 1834 |||||| ||||||| ||||| || ||||| | | || || || || || || || Sbjct 89851247 TTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCC 89851306 Query 1835 AGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGT 1894 ||||||| | |||||| || | |||||| |||| ||| || | | ||| | Sbjct 89851307 AGTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1895 ATACTTTTGGG-CTT-AGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCT 1952 | |||||| ||| || || | ||| ||||| | || || || |||||||| || Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1953 GGCCCACACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATTGATATAGGTCTATC 2012 ||||||| |||||| ||| | ||| | ||| || | ||||| | ||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCAT 89851486 Query 2013 CGGCCGCGCAGCGG 2026 |||||||||||||| Sbjct 89851487 CGGCCGCGCAGCGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8870251753440