Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013467.1 Length=2814 Score E Sequences producing significant alignments: (Bits) Value seq11 105 1e-19 seq13 104 4e-19 >seq11 Length=168460249 Score = 105 bits (116), Expect = 1e-19 Identities = 208/306 (68%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 1724 CCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTC 1783 ||| ||||||| ||||| || | ||| || || || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1784 CCGTATTTACAGTTGGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTTAAAGTGCT 1841 |||||||| |||| || ||||| | ||| || || || || || || || ||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACTT 1901 | |||||||| || | |||||| |||| ||| || ||| | || | | |||| Sbjct 165527491 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTT 165527432 Query 1902 TTGGGCTTAAATCTAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATA 1961 || | | || | ||| ||||||| ||||||||| ||||| || || ||||| | Sbjct 165527431 TTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACA 165527372 Query 1962 CTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGGTCTATCCGGCCGCG 2021 |||||||| | ||| |||| || | | | || | ||||| |||||||| Sbjct 165527371 TTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCG 165527312 Query 2022 CAGCGG 2027 |||||| Sbjct 165527311 CAGCGG 165527306 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 208/303 (69%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 1728 CTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGT 1787 ||||||| ||||| || | ||| || || || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1788 ATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAGT 1847 |||| ||||| || ||||| | | || || || || || || || ||||||| |||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1848 ATTGGGGGTTGACGTCATCAATGACGTTATAC-CAAGCACTATTGCTGTATACTTTTGGG 1906 |||| || | |||||| |||| ||| || ||| | ||| | | |||||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGA-GAAGACTTTTTCT 89851377 Query 1907 -CTTAAA-TCTAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATACTG 1964 ||| | || | ||| ||||||| ||||||||| ||||| || || ||||| | || Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1965 TTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGGTCTATCCGGCCGCGCAG 2024 |||| || | ||| | ||| || | ||| || | ||||| ||||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 2025 CGG 2027 ||| Sbjct 89851498 CGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8892651379080