Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013639.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-26 seq13 86.0 1e-13 seq11 86.0 1e-13 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 191/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1765 CTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCA 1824 |||| || |||| || || | ||||||| || ||||||||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1825 TAAATTCCTTAAAGTGTTTTAGATAATGGGGATCGACGTCATCAATGACGTTATA--CCA 1882 |||||||| ||||||||| | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1883 AGCGTTATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTGG 1942 | | ||||| ||||| | ||| | |||||||||| ||||| ||| ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1943 CCCTAATGACCTAGCCCAAACTGTTTTGCCGGTACGACTATCGCCCTCAATAACTAT--A 2000 || ||||| || ||||| | ||| || ||||| | ||| || ||||| | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 2001 CTAATCGGTCTTAAAGGCCGCGCAGCG 2027 || | ||||| || || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 86.0 bits (94), Expect = 1e-13 Identities = 204/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1730 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1789 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1790 CTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTTTTAGATA 1849 ||| ||| ||||| | | | || || || ||||| || || |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1850 ATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACCTTTGGA-C 1908 || || | |||||| |||| ||| || | ||| || || | || ||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1909 TTAAG-TCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACTGTT 1967 || || || | ||||||||||| ||| |||||| || || || || ||||| | |||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1968 TTGCCGGTACGACTATCGCCCTCAATAACTAT--ACTAATCGGTCTTAAAGGCCGCGCAG 2025 || || || | ||| | || || | ||| ||| | ||||| | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 2026 CGGC 2029 |||| Sbjct 89851498 CGGC 89851501 Score = 86.0 bits (94), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 2358 CTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTTGTTGGG-GATACCAG 2416 ||||||||||| ||| |||| |||||| || | | ||| | ||||| ||| || Sbjct 172134403 CTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGAT-TGAG 172134461 Query 2417 GTCGAAGAATCGTTGATTCTGGCAGTTGTATTTGCCTTCGAATTGCAGAAGCACATGGAG 2476 ||| ||||||| | |||| || || ||| |||| ||| | |||| | ||||| || Sbjct 172134462 GTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAG 172134521 Query 2477 ATGAGGCTCGCCATTTTCGTGGAGTTCTCTGCAGAT 2512 |||||||| | | | |||||| |||||| ||||||| Sbjct 172134522 ATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGAT 172134557 >seq11 Length=168460249 Score = 86.0 bits (94), Expect = 1e-13 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1730 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1789 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1790 CTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTTTTAGATA 1849 ||| || ||||| | ||| || || || ||||| || || |||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1850 ATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACCTTTGGACT 1909 || || | |||||| |||| ||| || |||||| || || | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1910 TAAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACTGTTTT 1969 ||| | ||||||||||| ||| |||||| || || || || ||||| | |||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1970 GC 1971 || Sbjct 165527364 GC 165527363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8873451699960