Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013640.2 Length=2823 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 2e-16 seq11 95.1 2e-16 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 211/314 (67%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 1751 ATGAGGAACCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1810 |||| |||| ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 89851187 ATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGAC 89851246 Query 1811 CTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAA 1870 |||||| ||||||| ||||| || ||||| | | || || || || || || || Sbjct 89851247 TTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCC 89851306 Query 1871 AGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGT 1930 ||||||| | |||||| || | |||||| |||| ||| || | | ||| | Sbjct 89851307 AGTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1931 AAACTTTTGGG-CTTAAA-TCTAAATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCT 1988 | |||||| ||| | || | ||| ||||| | ||| || || |||||||| || Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1989 GGCCCATACTGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATC 2048 ||||| | |||||| ||| | ||| | ||| || | || || | ||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCAT 89851486 Query 2049 CGGCCGCGCAGCGG 2062 |||||||||||||| Sbjct 89851487 CGGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 207/308 (67%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 1757 AACCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCT 1816 ||||| ||||||| ||||| || | ||| || || || || ||||| | || ||||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1817 TTCCGTATTTACAGTTGGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTTAAAGTG 1874 | |||||||| |||| || ||||| | ||| || || || || || || || |||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTG 165527494 Query 1875 CTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAAC 1934 | | | |||||| || | |||||| |||| ||| || ||| |||| | | || Sbjct 165527493 CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 165527434 Query 1935 TTTTGGGCTTAAATCTAAATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCCA 1994 |||| | | || | ||| ||||| | ||| || || |||||||| || ||||| Sbjct 165527433 TTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCA 165527374 Query 1995 TACTGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATCCGGCCG 2054 | |||||| | | | ||| |||| || | | || | ||||| |||||| Sbjct 165527373 CATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCG 165527314 Query 2055 CGCAGCGG 2062 |||||||| Sbjct 165527313 CGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8921450897760