Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014066.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq13 185 1e-43 seq11 168 1e-38 seq16 136 7e-29 >seq13 Length=197258317 Score = 185 bits (204), Expect = 1e-43 Identities = 263/366 (72%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTAT 1611 ||||| ||||| || | ||||| ||| || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1612 TTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTTT 1671 ||||| || |||||||||| | ||| || || || || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1672 AGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCGT 1731 || || || |||| | ||| || |||| ||| || || || |||||||| ||||| | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1732 --GGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCACA 1789 |||| ||||| || |||| | |||||||||| || | | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1790 TTGTCTTTCCGGTCCTCGAATCACCTTCAACGATGAT--ACTAACTGGTCTCTCAGGCCG 1847 |||| || || ||||| ||||||| ||| | ||| || ||| ||||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1848 CGCAGCGGGATCCCTTCCAAAATATTCATCGACCCACTCTTGCATCTCGTCAGGCACGTT 1907 |||||||| | |||||| ||| ||| |||| | ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1908 AGTGAA 1913 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 116 bits (128), Expect = 6e-23 Identities = 439/681 (64%), Gaps = 11/681 (2%) Strand=Plus/Plus Query 1667 GCTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGA 1726 |||| | || || |||| | ||| || |||| ||| || || | | |||||| ||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1727 CTCGTGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCC 1786 || | ||||| ||||| || |||| | |||||||||| || | | | ||||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1787 ACATTGTCTTTCCGGTCCTCGAATCACCTTCAACGATGATACTAAC--TGGTCTCTCAGG 1844 ||||||| || || || || |||| |||||| | ||| |||| || ||||||| | || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1845 CCGCGCAGCGGGATCCCTTCCAAAATATTCATCGACCCACTCTTGCATCTCGTCAGGCAC 1904 ||| ||||||| | | ||||| ||| ||| |||| ||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1905 GTTAGTGAACGAGGAGAGTTGAAACGGAGGGACCCATGGTTCCGGAGCCTTTTGGAATAT 1964 |||||||| || | | || ||| |||||||| | | || ||| | | Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGAC 172134179 Query 1965 TTTGGTGGCGTTGGCGACGAGGTTGTGGTGCTGAAGGAAGAAATGTTGCGGTTGTTCTTC 2024 | | |||| | || |||||| ||||| | || || | | |||||||| || Sbjct 172134180 TCTATCCAGGTTGAAGTTGATGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATC 172134239 Query 2025 TTTGATAATACGCAGCGCTTCCTCCGCCGACGATGCA-TTCAACGCCTTGGCATATGTAT 2083 | | |||| ||| || || || | || |||| || || || | ||||| Sbjct 172134240 TCTAATAACCTGCAATGCCTCGTCTTTAG-CGTTGCACACCAGTGCTCTGCCGTATGTTG 172134298 Query 2084 CGTTAGCTGATTGCTGGCCT--CCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCA 2141 ||| | ||| | || ||| | |||| | || | ||||||| ||||| Sbjct 172134299 TGTTGG--GATCGAAATTCTGATTTCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCA 172134356 Query 2142 TTCGATTGTATCTCCGTCCTTGTCGATATAGGATTTGACGTCGGAGCTGGATTTAGTTCC 2201 |||||| ||| ||||| || | || || | |||| | | |||||||||| Sbjct 172134357 GTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGAAACTGGATTTAGCAGA 172134416 Query 2202 CTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGACACCAGGTCGAAGAATCTGTT 2261 ||| |||| ||||| || | | ||| | ||||| ||||| |||||||| Sbjct 172134417 CTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGAGGTCAAAGAATCTTGG 172134476 Query 2262 ATTCGTGCATCTGTATTTCCCCTCGAACTGGATAAGGACGTGCAGATGAGGTTGCCCATC 2321 ||| ||| || ||||| || | ||| || | || || |||||||| | | || Sbjct 172134477 ATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTC 172134536 Query 2322 TTCGTGAAGTTCTCTGCAGAT 2342 |||||| |||||| ||||||| Sbjct 172134537 TTCGTGCAGTTCTATGCAGAT 172134557 >seq11 Length=168460249 Score = 168 bits (186), Expect = 1e-38 Identities = 262/371 (71%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1545 ACCCTCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTT 1604 |||| | ||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1605 GCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTT 1664 |||||||||||| | |||||||||| ||| || || || || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1665 TAGCTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATA 1724 | || || || |||| | ||| || |||| ||| || || | | |||||| | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1725 GACTCGTGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGC 1784 |||| | |||| ||||| || |||| | |||||||||| || | | | ||| Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1785 CCACATTGTCTTTCCGGTCCTCGAATCACCTTCAACGATGAT--ACTAACTGGTCTCTCA 1842 ||||||||| || | ||||| |||| ||||| | ||| | ||| ||||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATC 165527319 Query 1843 GGCCGCGCAGCGGGATCCCTTCCAAAATATTCATCGACCCACTCTTGCATCTCGTCAGGC 1902 ||||||||||||| | ||||| ||| ||| |||| ||||||| || || || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1903 ACGTTAGTGAA 1913 || |||||||| Sbjct 165527258 ACATTAGTGAA 165527248 >seq16 Length=188620566 Score = 136 bits (150), Expect = 7e-29 Identities = 236/337 (70%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 1586 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGA 1645 |||| || ||||| || || | ||| ||||| |||| ||||| || |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1646 TCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTAT 1705 ||||| |||||||| |||| | || ||| | | |||| ||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1706 ACTCCACTTCGTTTGAATAGACTCGTGGG-TTGAAGTCCAGGTGTCCACTGAGGTAGTTA 1764 | ||||| ||||| || | || ||| || || ||||| | | ||||| | || ||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 1765 TGTGGGCCTAGCGCACGTGCCCACATTGTCTTTCCGGTCCTCGAATCACCTTCAACGATG 1824 ||| || | | | ||||||||||||||||||||| || ||||||||||||| || Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 1825 AT--ACTAACTGGTCTCTCAGGCCGCGCAGCGGGATCCCTTCCAAAATATTCATCGACCC 1882 || ||| | |||||| || || | |||| || | |||||| ||||| ||| Sbjct 2249100 ATTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 1883 ACTCTTGCATCTCGTCAGGCACGTTAGTGAACGAGGA 1919 | | |||||| | | || ||||| ||||| || || Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8249466067744