Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014130.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq16 138 2e-29 seq13 129 1e-26 seq11 116 6e-23 >seq16 Length=188620566 Score = 138 bits (152), Expect = 2e-29 Identities = 237/340 (70%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1587 CTTTAATTTGAACTGGTTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCA 1646 |||| || ||||| ||||| | ||| ||||| |||| |||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1647 GAAGTTCTTTCCAGTGCTTCAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1706 | | ||| |||||||| || || | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1707 ACTCCACTTCATTTGAATATACCCGGGGATTGAAGTCCAGATGTCCACTGAGATAATTAT 1766 | ||||| || || || | ||| ||||| ||||| | || ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1767 GTGGGCCTAACGCACGAGCCCACATTGTCTTACCTGTCCTTGAGTCACCTTCCACTATGA 1826 || || || | | |||||||||||||| || || ||||| |||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1827 T--ACTTACTGGTCTATCTGGCCGCGCAGCGGAACCTCTC----CCAAAATAACTGTCCG 1880 | ||| | ||||| ||| || | |||| || || ||||||| || | Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1881 CCCAGTCTTGCATTTCTTCAGGAACGGCAGTGAAAGAGGA 1920 |||| | |||||| ||| || ||| |||||||| || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 252/367 (69%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 1553 CCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTAT 1612 || || ||||| || | ||||| ||| || || ||||| | || ||| ||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1613 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTCAACTTT 1672 ||||| || |||||||| | | || || || | || |||||||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1673 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTTGAATATAC--CC 1730 || || |||| | |||||| |||| ||| || || || || ||||| | || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1731 GGGGATTGAAGTCCAGATGTCCACTGAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1790 |||| ||||| ||| |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1791 TTGTCTTACCTGTCCTTGAGTCACCTTCCACTATGAT--ACTTACTGGTCT-ATCTGGCC 1847 |||| ||||||||||| || |||| ||| | || || |||| |||||| ||| |||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATC-GGCC 89851491 Query 1848 GCGCAGCGGAACCTCTCCCAAAATAACTGTCCGCCCAGTCTTGCATTTCTTCAGGAACGG 1907 ||||||||| | ||||| || || ||||| | ||||| ||||| || || Sbjct 89851492 GCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACAT 89851551 Query 1908 CAGTGAA 1914 |||||| Sbjct 89851552 TAGTGAA 89851558 >seq11 Length=168460249 Score = 116 bits (128), Expect = 6e-23 Identities = 255/375 (68%), Gaps = 18/375 (5%) Strand=Plus/Minus Query 1546 ACCCTCACCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTTAATTTGAACTGGTTT 1605 |||| | || || ||||| |||| ||||| ||| || || ||||| | || ||| || Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1606 GCCGTATTTGCAATTTGACTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGC 1663 |||||||||||| | |||||||| | ||| || || || | || |||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGC 165527493 Query 1664 TTCAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTTGAA 1723 | || || || |||| | |||||| |||| ||| || || | | ||||| Sbjct 165527492 ATGAA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1724 TATACCCGGGGATTGAAGTCCAGATGTCCACTGAGATAATTATGTGGGCCTAACGCACGA 1783 | || ||| ||||| ||| |||| | || |||||| || || | | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1784 GCCCACATTGTCTTACCTGTCCTTGAGTCACCTTCCACTATGATACTT-AC--TGGTCT- 1839 ||||||||||| || | |||||| || | ||||| |||||| || || |||||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTTTGGTCTC 165527322 Query 1840 ATCTGGCCGCGCAGCGGAACCTCTCCCAAAATAACTGTCCGCCCAGTCTTGCATTTCTTC 1899 ||| ||||||||||||| | ||||| || || ||||| ||||||| ||||| Sbjct 165527321 ATC-GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTC 165527263 Query 1900 AGGAACGGCAGTGAA 1914 || || |||||| Sbjct 165527262 TGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246266119696