Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014138.1 Length=2653 Score E Sequences producing significant alignments: (Bits) Value seq16 147 4e-32 seq13 147 4e-32 seq11 131 3e-27 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 238/340 (70%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1622 CTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAA 1681 |||| || ||||| || || | ||||||||| || | ||||| ||| |||| ||||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1682 TCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCTGACATCATCGATGACGTTAT 1741 |||||||||||||| |||| |||| ||| | || | ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1742 ACTCAACTTGATTTGAGTAGACCCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTAT 1801 | || || | || ||| | ||| | ||| || ||||||| ||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1802 GTGGGCCTAACGCACGAGCCCACATCGTCTTACCAGTTCGAGAATCACCTTCTACAATCA 1861 || || || | | |||||||| ||||| || |||| ||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1862 --AACTGATGGGCCTGATAGGCCGCGCAGCGGAACCTCTC----CCAAAATAATCATCCG 1915 ||||| || || | || || | |||| || || |||||||||||| | Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1916 CCCATTCCTGCATCTCTTCCGGAACGTTAGTGAACGATGA 1955 |||||| ||||| ||| || ||||| ||||| || || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 147 bits (162), Expect = 4e-32 Identities = 255/368 (69%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1586 CTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGT 1645 |||| || ||||| || | ||||| ||| || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1646 ACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCT 1705 | ||||| || |||||||||| || |||||| ||||| || || ||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1706 TTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGAC-- 1763 | | |||||| || | |||||||||| ||| || ||||| | |||||| |||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1764 CCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1823 |||| || | ||| |||| | ||| |||||| || || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1824 CATCGTCTTACCAGTTCGAGAATCACCTTCTACAATCA--AACTGATGGGCCTGATAGGC 1881 ||| || ||||| || | ||||||| ||||| || | ||| | || || || ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1882 CGCGCAGCGGAACCTCTCCCAAAATAATCATCCGCCCATTCCTGCATCTCTTCCGGAACG 1941 |||||||||| | ||||| || ||| ||||||| |||| ||||| || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1942 TTAGTGAA 1949 |||||||| Sbjct 89851551 TTAGTGAA 89851558 >seq11 Length=168460249 Score = 131 bits (144), Expect = 3e-27 Identities = 252/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1582 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTG 1641 ||| |||| || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1642 CCGTACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTT 1701 ||||| ||||| | |||||||||| | |||||| ||||| || || ||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1702 AGCTTTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAG 1761 || | | |||||| || | |||||||||| ||| || ||| | | |||||| || Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1762 ACCCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCC 1821 || ||| || | ||| |||| | ||| |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1822 CACATCGTCTTACCAGTTCGAGAATCACCTTCTACAAT--CAAACTGATGGGCCTGATAG 1879 ||||| || || | || | |||| ||||| || || ||| | || || || | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1880 GCCGCGCAGCGGAACCTCTCCCAAAATAATCATCCGCCCATTCCTGCATCTCTTCCGGAA 1939 |||||||||||| | ||||| || ||| |||||||| |||| ||||| || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1940 CGTTAGTGAA 1949 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8380663937712