Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014140.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq13 123 4e-25 seq11 122 2e-24 seq16 95.1 2e-16 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 208/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 1696 CCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTTAATTTGAGTGGGCTTGCCGTAC 1755 || || ||||| || | ||||||||||| || ||||| | || | |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1756 TTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGAATTCTTTCATATGCTTTAGATAG 1815 || ||| ||||| | | ||| | || || || |||||| ||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1816 TGGGGATCTACGTCATCGATGACGTTGTACCAGGCATCGTTTGAATAGACCTTGGCGC-- 1873 || || || ||||||||||| |||||| | |||||||| |||| || | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1874 TGAGATCTAAATGACCACATAGGTAATTGTGCCTACCAAGGCTTCTGGCCCACATCGTCT 1933 |||| || | ||||||||||| ||| || || | || | ||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1934 TCCCCGTCCTGGATTCACCTTCCAGGACGATGCTTATGGGTCTCATCGGCCGCGCAGCGG 1993 | || |||||||| |||| ||| | || || | |||||||||||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Score = 86.0 bits (94), Expect = 1e-13 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 1824 TACGTCATCGATGACGTTGTACCAGGCATCGTTTGAATAGACCTTGGCGCTGAGATCTAA 1883 || ||||||||||| |||||| || | |||||| |||| || | |||| || || Sbjct 172133902 TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAA 172133961 Query 1884 ATGACCACATAGGTAATTGTGCCTACCAAGGCTTCTGGCCCACATCGTCTTCCCCGTCCT 1943 || ||||||| ||| || || || || | | ||| |||||||| || || || || || Sbjct 172133962 TTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCT 172134020 Query 1944 GGATTCACCTTCCAGGACGA-TGCTTATGGGTCTCATCGGCCGCGCAGCGG 1993 ||| | |||||| | || | || | | ||||||| |||||| ||||||| Sbjct 172134021 GGAATTACCTTCTATGATTACTGACT-TTGGTCTCACCGGCCGTGCAGCGG 172134070 >seq11 Length=168460249 Score = 122 bits (134), Expect = 2e-24 Identities = 208/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 1696 CCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTTAATTTGAGTGGGCTTGCCGTAC 1755 || || ||||| || | ||||||||||| || ||||| | || | ||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1756 TTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGAATTCTTTCATATGCTTTAGATAG 1815 || || ||||| | || ||| | || || || |||||| ||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1816 TGGGGATCTACGTCATCGATGACGTTGTACCAGGCATCGTTTGAATAGACCTTGGCGCTG 1875 || || || ||||||||||| |||||| || | |||||| |||| || | || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1876 AGATCTAAATGACCACATAGGTAATTGTGCCTACCAAGGCTTCTGGCCCACATCGTCTTC 1935 | || | ||||||||||| ||| || || || || | ||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1936 CCCGTCCTGGATTCACCTTCCAGGA-CGATGCTTATGGGTCTCATCGGCCGCGCAGCGG 1993 | |||||||| | ||||| | || | || | | |||||||||||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT-TTGGTCTCATCGGCCGCGCAGCGG 165527306 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 1730 CTTTAATTTGAGTGGGCTTGCCGTACTT-CACGTTGCTTTGCCAGTCTCTTTGGGACCCC 1788 |||| || ||| || || | |||||| ||| |||||| ||||||||||||| | || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1789 ATGAATTCTTTCATATGCTTTAGATAGTGGGGATCTACGTCATCGATGACGTTGTA--CC 1846 | ||||| ||| || |||| | | || || | |||| ||| || ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1847 AGGCATCGTTTGAATAGACCTTGGCGCTGAGATCTAAATGACCACATAGGTAATTGTGCC 1906 | ||||||| || | ||| | | | | ||||||| ||||| || ||||| || | Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1907 TACCAAGGCTTCTGGCCCACATCGTCTTCCCCGTCCTGGATTCACCTTC 1955 | || | ||| |||||||| ||||| || || || || |||||||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTC 2249108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745453839160