Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014141.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq13 116 6e-23 seq11 107 3e-20 seq16 98.7 2e-17 >seq13 Length=197258317 Score = 116 bits (128), Expect = 6e-23 Identities = 207/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1650 TCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTACCGTA 1709 ||| |||||||||| | ||| || || || || ||||| | || | || || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1710 TTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTA 1769 ||| ||| |||||||| || || || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1770 GTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATTGCTGTACACCTTTGGAC- 1828 || || || ||||||||||| |||||| | | || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1829 -TCAGGTCTAGATGACCACATAGGTAATTGTGTACCCCCAAAGACCGCGCCCACATCGTC 1887 | ||||| | ||||||||||| ||| || ||| |||||||| | |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1888 TTCCCCGTTCTGGAATCACCTTCAACGACGATACTCATGGGTCTGTTAGGCCGCGCAGCG 1947 || || || |||||||||| ||| | || || | | ||||| | |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1948 G 1948 | Sbjct 89851500 G 89851500 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1650 TCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTACCGTA 1709 ||| |||||||||| | ||| || || || || ||||| | || | || || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1710 TTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTA 1769 ||| || |||||||| | || || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1770 GTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATTGCTGTACACCTTTGGACT 1829 || || || ||||||||||| |||||| || || || | | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1830 CAGGTCTAGATGACCACATAGGTAATTGTGTACCCCCAAAGACCGCGCCCACATCGTCTT 1889 |||| | ||||||||||| ||| || ||| |||||||| | |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1890 CCCCGTTCTGGAATCACCTTCAACGACGATACTCATGGGTCTGTTAGGCCGCGCAGCGG 1948 | || ||||||| ||||| | || | | | ||||| | ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 >seq16 Length=188620566 Score = 98.7 bits (108), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 1685 CTTTAATTTGAATCGGTTTACCGTATTT-CGTGTTGCTCTGCCAATCATGCTGGGCCCCC 1743 |||| || |||| |||||| | ||| || | ||||| ||||| || || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCT-TGCCAGTCTCTTTGTGCACCA 2249275 Query 1744 ATGAATTCCTTGAAGTGCTTTAGGTAGTGCGGATCTACGTCATCGATGACGTTGTA--CC 1801 | |||||||| |||| |||| | || || | |||| ||| || ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1802 ATGCATTATTGCTGTACACCTTTGGACTCAGGTCTAGATGACCACATAGGTAATTGTGTA 1861 | ||| || | | ||| | ||| ||| ||||| || ||||| || ||||| ||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1862 CCCCCAAAGACCGCGCCCACATCGTCTTCCCCGTTCTGGAATCACCTTCAA 1912 ||||| || | |||||||| ||||| || ||||| ||||||||||||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAA 2249106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8556661080352