Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014324.1 Length=2981 Score E Sequences producing significant alignments: (Bits) Value seq13 145 1e-31 seq11 122 2e-24 seq16 98.7 2e-17 >seq13 Length=197258317 Score = 145 bits (160), Expect = 1e-31 Identities = 208/291 (71%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 1891 CTCCTGGGTTGCATAAAATGATCGAAGGGATTCCCCCTTTTATAATACGTGGCTTCCCGT 1950 ||||||||||||||| ||||| | || || || ||||| | || || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1951 ATTTGAGGTTTGTCTGCCACTCCTTTTGCGCACCAATTAAATGCTTCCAGTGCTTCATCT 2010 ||||| ||| | |||||| | | ||| || ||||| || | ||||||||||| | | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 2011 TTAGATAATGGGGGTCCACGTCATCAATCACGTTGTAAGAAACGTCGTCGTTGTATAC-- 2068 || ||| ||| | |||||| || | ||||||| |||||||| | | || Sbjct 89851319 ----ATTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 2069 TTTAGTGGAGAAGTCGAGATGACCGGTTATGTAATTATGAGATCCAAGGGATCTTGCCCA 2128 ||| | || ||| | |||||| || ||| ||||| ||| | ||||||||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 2129 CAGGGTTTTACCTGTTCTTGAAGGACCTTCGATGATTATTGATTTAGGTCT 2179 || ||||||||||| || ||| || ||| ||||||||||| || ||||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCT 89851483 Score = 80.6 bits (88), Expect = 5e-12 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 2096 TATGTAATTATGAGATCCAAGGGATCTTGCCCACAGGGTTTTACCTGTTCTTGAAGGACC 2155 |||||| ||||| ||| | |||||||||||||| ||||| |||||||| ||| ||| Sbjct 172133970 TATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGAATTACC 172134029 Query 2156 TTCGATGATTATTGATTTAGGTCT 2179 ||| ||||||| ||| || ||||| Sbjct 172134030 TTCTATGATTACTGACTTTGGTCT 172134053 >seq11 Length=168460249 Score = 122 bits (134), Expect = 2e-24 Identities = 201/289 (70%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 1891 CTCCTGGGTTGCATAAAATGATCGAAGGGATTCCCCCTTTTATAATACGTGGCTTCCCGT 1950 ||||||||||||||| ||||| | || || || ||||| | || || |||||| |||| Sbjct 165527605 CTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGT 165527546 Query 1951 ATTTGAGGTTTGTCTGCCACTCCTTTTGCGCACCAATTAAATGCTTCCAGTGCTTCATCT 2010 ||||| || | |||||| | ||| || ||||| || | ||||||||| | | | Sbjct 165527545 ATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 2011 TTAGATAATGGGGGTCCACGTCATCAATCACGTTGTAAGAAACGTCGTCGTTGTATACTT 2070 || ||| ||| | |||||| || | |||||| | ||| || | | |||| Sbjct 165527485 ----ATTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTT 165527432 Query 2071 TAGTGGAGAAGTCGAGATGACCGGTTATGTAATTATGAGATCCAAGGGATCTTGCCCACA 2130 | || | ||| | |||||| |||||| ||||| ||| | ||||||||||||| Sbjct 165527431 TTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACA 165527372 Query 2131 GGGTTTTACCTGTTCTTGAAGGACCTTCGATGATTATTGATTTAGGTCT 2179 ||||| | ||| || ||| ||||| |||||| |||| || ||||| Sbjct 165527371 TTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCT 165527323 >seq16 Length=188620566 Score = 98.7 bits (108), Expect = 2e-17 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1941 GGCTTCCCGTATTTGAGGTTTGTCTGCCACTCCTTTTGCGCACCAATTAAATGCTTCCAG 2000 || || | ||| ||| |||| ||||| || |||| ||||||| ||| | ||||||| Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 2001 TGCTTCATCTTTAGATAATGGGGGTCCACGTCATCAATCACGTTGTAAGAAACGTCGTCG 2060 || || || | | || |||| |||| |||||| ||||| || || |||| Sbjct 2249259 TGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCACATCGTTA 2249206 Query 2061 TTGTATACTTTAGTGGAGAAGTCGAGATGACCGGTTATGTAATTATGAGATCCAAGGGAT 2120 | | || ||| ||||| | || ||| ||| |||||||| ||| | ||| Sbjct 2249205 GAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGAT 2249146 Query 2121 CTTGCCCACAGGGTTTTACCTGTTCTTGAAGGACCTTCGATGATTATTGATTTAGGTCT 2179 |||||||||| || || || ||||||||| |||||| || |||||||| | |||||| Sbjct 2249145 CTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTGAGGTCT 2249087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9427042447920