Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014446.1 Length=2608 Score E Sequences producing significant alignments: (Bits) Value seq16 158 2e-35 seq13 152 8e-34 seq11 140 5e-30 >seq16 Length=188620566 Score = 158 bits (174), Expect = 2e-35 Identities = 235/334 (70%), Gaps = 6/334 (2%) Strand=Plus/Minus Query 1574 CTTTAATTTGAACTGGCTTGCCGTACTTGCAATTTGATTGCCAGTCCTTCTGGGCCCCCA 1633 |||| || ||||| || || | ||||||||| |||| ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1634 GAAGTTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1693 | | ||| |||||||| ||||| | |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1694 ACTCCACGTCATTTGAAAATACTCGAGGGTTGAAGTCCAGATGTCCACTAAGATAATTAT 1753 | ||||| || || || || || ||| || ||||| | || ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1754 GTGGGCCTAACGAACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGA 1813 || || || || | |||||||| ||||| || || || || |||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1814 TACTCATAGGTCTCTCCGGCCGCGCAGCGGCACCTCTTCCAAAATTCTCATCGGCCCATT 1873 | | ||||||| || || | |||| | | ||||| ||||| ||||||| Sbjct 2249099 TTGACTGAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCATT 2249040 Query 1874 CTTGCATCTCGTCGGGAACGGCTGTGAAAGAAGA 1907 |||||| | | || ||| ||||||||||| Sbjct 2249039 TTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 152 bits (168), Expect = 8e-34 Identities = 247/355 (70%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 1540 CCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1599 || || ||||| || | ||||| ||| || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1600 TTGCAATTTGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAACTTT 1659 ||||| || || ||||| | | || || || | || |||||||||||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT-- 89851318 Query 1660 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAAAATACTCGA 1719 |||| |||| | |||||| |||| ||| || || ||||| ||||| || ||| Sbjct 89851319 ----ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1720 GGGT--TGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGAACGAGCCCACA 1777 | ||| ||||| ||| |||| | || |||||| || || || | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1778 TCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGATACTCATAGGTCTCTCCGGCCGCG 1837 | || || |||||||| || |||| ||||| || || | | |||||| |||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1838 CAGCGGCACCTCTTCCAAAATTCTCATCGGCCCATTCTTGCATCTCGTCGGGAAC 1892 ||||||| | |||||| | ||| ||||||| ||||| || || || || Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 Score = 93.3 bits (102), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 1663 TATTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAAAATACTCGAGGG 1722 ||||| |||| | |||||| |||| ||| || || ||| ||||| || ||| | Sbjct 172133891 TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 172133950 Query 1723 TTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGAACGAGCCCACATCGTC 1782 |||| ||||| || |||| | || |||||| || | || | |||||||| || Sbjct 172133951 TTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTT 172134009 Query 1783 TTCCCTGTCCTCGAGTCACCTTCTACTATGATACTCA--TAGGTCTCTCCGGCCGCGCAG 1840 || ||||| || || | |||||||| || |||| | | |||||| ||||||| |||| Sbjct 172134010 TTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAG 172134067 Query 1841 CGGCACCTCTTCCAAAATTCTCATCGGCCCATTCTTGCA 1879 |||| | | ||||| | ||| ||||||||||||| Sbjct 172134068 CGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCA 172134106 >seq11 Length=168460249 Score = 140 bits (154), Expect = 5e-30 Identities = 249/362 (69%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 1533 ACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTT 1592 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1593 GCCGTACTTGCAATTTGATTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGC 1650 |||||| ||||| | || ||||| | ||| || || || | || |||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGC 165527493 Query 1651 TTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAA 1710 | || | |||| |||| | |||||| |||| ||| || || ||| ||||| Sbjct 165527492 ATGAAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1711 AATACTCGAGGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGAACGA 1770 || ||| |||| ||||| ||| |||| | || |||||| || || || | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1771 GCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGATACTCATAGGTCTCTCC 1830 |||||||| || || | |||||| || | ||||| || || | | | |||||| | Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATC 165527319 Query 1831 GGCCGCGCAGCGGCACCTCTTCCAAAATTCTCATCGGCCCATTCTTGCATCTCGTCGGGA 1890 |||||||||||||| | ||||| | ||| ||||||||||||| || || || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1891 AC 1892 || Sbjct 165527258 AC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236666275552