Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014473.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq16 138 2e-29 seq11 95.1 2e-16 seq13 93.3 7e-16 >seq16 Length=188620566 Score = 138 bits (152), Expect = 2e-29 Identities = 193/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1729 CTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCA 1788 |||| || ||||| || |||| |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1789 TGAATTCCTTAAAGTGCTTTAGGTAATGGGGATCTACGTCATCAATGACGTTATA--CCA 1846 |||||||| |||| |||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1847 GGCATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGG 1906 |||| ||| | | ||| | || | | ||||| || |||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1907 TCCGAGTGATCTGGCCCACATCGTCTTGCCCGTTCTACTATCACCCTCTATCACTAT--A 1964 ||| | |||||| |||||||| ||||| || ||||| |||||| || || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1965 CTTATGGGCCTCAAAGGCCGCGCAGCG 1991 || | || ||||| || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 208/306 (68%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 1694 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1753 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1754 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1812 |||| | | || ||||| | | ||| || || || || || || ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1813 AATGGGGATCTACGTCATCAATGACGTTATACCAGGCATCATTATT---GTAGACCTTTG 1869 | || || || |||||| |||| ||| || | || | || || | |||| ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTT 165527429 Query 1870 GGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCGAGTGATCTGGCCCACATCG 1929 | | |||| | ||| ||||| | || |||||| ||| | ||||| |||||||| | Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369 Query 1930 TCTTGCCCGTTCTACTATCACCCTCTATCACTAT--ACTTATGGGCCTCAAAGGCCGCGC 1987 | |||| || || || ||| | ||| | | | |||| || |||| |||||||| Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGC 165527311 Query 1988 AGCGGC 1993 |||||| Sbjct 165527310 AGCGGC 165527305 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 207/305 (68%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1694 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1753 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1754 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1812 |||| | || || ||||| | ||| || || || || || || ||||||| | || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1813 AATGGGGATCTACGTCATCAATGACGTTATACCAGGCATCATTATTGTAGACCTTTGGGC 1872 | || || || |||||| |||| ||| || | || || | |||| ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1873 --TAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCGAGTGATCTGGCCCACATCGT 1930 | ||||| | ||| ||||| | || |||||| ||| | ||||| |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1931 CTTGCCCGTTCTACTATCACCCTCTATCACTAT--ACTTATGGGCCTCAAAGGCCGCGCA 1988 || || || || ||||| ||||| | ||| |||| || |||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1989 GCGGC 1993 ||||| Sbjct 89851497 GCGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671859210080