Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014510.2 Length=2591 Score E Sequences producing significant alignments: (Bits) Value seq13 132 8e-28 seq11 132 8e-28 seq16 129 1e-26 >seq13 Length=197258317 Score = 132 bits (146), Expect = 8e-28 Identities = 263/387 (68%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 1532 CTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTTAATTTGAATTGGCTTTCCGT 1591 ||||||| ||||| || | ||| | |||||||| ||||| | || ||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1592 ATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAGCTCTTTCCAATGTTTCATCT 1651 |||| ||||| || ||||||| || || || || || | ||||||||| || || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1652 TTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAAACTT 1711 | || ||||| || | |||||| |||| ||| || || | | ||||| | |||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1712 TGGAAT--TAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCCCA 1769 | | | | |||| || |||| | || |||||| || | | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1770 CATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTAT--ACTGATAGGTCTTTCTGGC 1827 ||| || ||||||||||| ||| | ||||| ||||| ||| | ||||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1828 CGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGACG 1887 ||||||||||| ||||| || ||| ||||||| ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1888 TTAGTGAAGGAGGAGAGTGGAAACGGA 1914 ||||||||| || | ||| || ||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGA 89851577 Score = 80.6 bits (88), Expect = 4e-12 Identities = 169/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1650 CTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAAAC 1709 ||| || ||||| || | |||||| |||| ||| ||||| || ||||| | || Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943 Query 1710 TTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCCCA 1769 ||| || | |||| || |||| | || |||||| || | | | ||||| Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002 Query 1770 CATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTATACTGA--TAGGTCTTTCTGGC 1827 ||| || || ||||| || ||| || ||||| |||| |||| | ||||| | ||| Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTA--CTGACTTTGGTCTCACCGGC 172134060 Query 1828 CGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGACG 1887 || |||||||| ||||||| || ||| ||||||||||||| || || | || Sbjct 172134061 CGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACA 172134120 Query 1888 TTAGTGAAG 1896 ||||||||| Sbjct 172134121 TTAGTGAAG 172134129 >seq11 Length=168460249 Score = 132 bits (146), Expect = 8e-28 Identities = 253/371 (68%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1528 CCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTTAATTTGAATTGGCTTT 1587 ||| ||||||| ||||| |||| ||| | |||||||| ||||| | || ||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1588 CCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAGCTCTTTCCAATGTTTC 1647 |||||||| |||| || ||||||| | || || || || | ||||||||| || Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1648 ATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAA 1707 | | || ||||| || | |||||| |||| ||| ||||| || ||||| | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1708 ACTTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCC 1767 ||||| || |||| || |||| | || |||||| || | | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1768 CACATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTATACTGA--TAGGTCTTTCTG 1825 ||||| || || | |||||| ||| || | ||| ||| | ||| | ||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCG 165527318 Query 1826 GCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGA 1885 ||||||||||||| |||||| || ||| ||||||||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1886 CGTTAGTGAAG 1896 | ||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 231/336 (69%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1568 CTTTAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTA 1627 |||| || |||| || |||| ||| || || |||| |||||| ||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1628 TCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTAT 1687 | || ||||| ||||| |||| |||| || | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1688 AGTCCGCTCCATTTGAATAAACTTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTAT 1747 | ||| | | || || |||| | | ||| || || | | ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1748 GTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTA 1807 || || | || | |||||||| ||||| || || |||||| || || ||||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1808 T--ACTGATAGGTCTTTCTGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCA 1865 | ||||| ||||| ||| || | |||| | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1866 TTCTTGCATCTCCTCCGGGACGTTAGTGAAGGAGGA 1901 || |||||| | | || ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8182267158736