Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014542.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq16 123 4e-25 seq13 96.9 6e-17 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 1739 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCA 1798 |||| || |||| || || | |||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1799 TGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACG 1858 |||||||| |||| |||||| | || |||| |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1859 CATCAGTACTGTACACCTTTGGACTTAGGTCTAAATGGCCACACAAATAATTATGTGGGC 1918 |||| || | | ||| | ||| | | |||||||| |||| |||||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1919 CTAGAGACCTGGCCCACATTGTTTTGCCGGTCCTGCTATCACCCTCGATGATAATACTAT 1978 | | || || ||||||||||| || ||||| || |||||| || || || || | Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1979 TAGGTCTCCATGGCCGCGCAGCG 2001 ||||||| |||| || | |||| Sbjct 2249093 GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1704 TCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAATGGGCTTCCCGTA 1763 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1764 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1823 || ||| ||||| | || || || || || || || ||||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1824 ATGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCAGTACTGTACACCTTTGGA 1881 || || || |||||| |||| |||||| | ||| || | | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1882 -CTT-AGGTCTAAATGGCCACACAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTG 1939 ||| ||||| | ||| ||||| | || |||||| || | ||| || |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1940 TTTTGCCGGTCCTGCTATCACCCTCGATGATAATACTATTAGGTCTCCATGGCCGCGCAG 1999 |||| || |||||| ||||| || ||||| || || |||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 2000 CGG 2002 ||| Sbjct 89851498 CGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732658222992