Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014631.1 Length=3065 Score E Sequences producing significant alignments: (Bits) Value seq13 140 6e-30 seq16 114 3e-22 >seq13 Length=197258317 Score = 140 bits (154), Expect = 6e-30 Identities = 261/383 (68%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 2026 CCAGGATTACATAAAATAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATAT 2085 || || || |||| || |||| ||||| || ||||| | || ||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 2086 TTGCAGTTGCTTTGCCAATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTTTAATTTT 2145 |||||||| ||||||| ||||| || ||||||| ||||||||| ||||| || | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 2146 AAATAAGATGGTGCTATGTCATCAATGACATTATATTCCACTTCATTACTGTACACACGT 2205 ||||| ||||||||| |||| || || || || || || | | || | Sbjct 89851321 TG------TGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 2206 GGAT--TGAAATCAAGATGCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCCCAGC 2263 | ||| || | ||| ||| | | ||| ||||| || || || ||||| ||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 2264 ATGTTTTACCTGTTCTACTATCACCTTCAATTATTAAAGATTTTGGTCTAATGGGCCTTG 2323 |||||||||||| || ||||| ||| || |||| || |||||||| || |||| | Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 2324 ATTCAATTGGCTGTCCAAAATAATTATCAGCCCATTCCTGCATTTCATCCGGAACGTTGT 2383 | | | ||||||| || ||| ||||||| |||| || || || || || Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAG 89851554 Query 2384 TGAATGATGATAATGGAAATGGA 2406 |||| ||||||||| |||||| Sbjct 89851555 TGAAGCTTGATAATGGGAATGGA 89851577 >seq16 Length=188620566 Score = 114 bits (126), Expect = 3e-22 Identities = 233/341 (68%), Gaps = 20/341 (6%) Strand=Plus/Minus Query 2060 CTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCCAATCATGTTGGGCCCCAA 2119 |||| |||||||| || |||| || ||||| || |||||| || ||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 2120 TAAGCTCTTTCCAATGCTTTAATTTTAAATAAGATGGTGCTATGTCATCAATGACATTAT 2179 | || ||||| || ||||||| | ||| | || |||||| || |||| Sbjct 2249273 GTAATTCCTTCCAGTG------TTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 2180 ATTCCACTTCATTACTGTACACACGT-GGATTGAAATCAAGATGCCCAGACAAGTAATTA 2238 ||||||| || ||| | | || ||| ||||| || || | || ||| || |||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 2239 TGCTTACCTAACGATCTGGCCCAGCATGTTTTACCTGTTCTACTATCACCTTCAATTATT 2298 || | || || ||||| ||||| ||| || || ||||| |||||||||||||||| Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 2299 AAAGATTTTGGTCT-AATGGGCCTTGATTCAATTGGCTGTC-----CAAAATAATTATCA 2352 | || | ||||| |||||| | ||| | |||||| |||||||| ||| Sbjct 2249100 ATTGACTGAGGTCTCAATGGG-CGTGAAGC-----GCTGTCGGATGAAAAATAATCATCT 2249047 Query 2353 GCCCATTCCTGCATTTCATCCGGAACGTTGTTGAATGATGA 2393 ||||||| ||||| | | || ||||| |||| || || Sbjct 2249046 GCCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9695837955600