Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014645.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq13 118 2e-23 seq16 109 1e-20 seq11 89.7 9e-15 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 249/367 (68%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 2263 TCTTGCAGATCTTGCATCGATTTGAAATTCTCCCCATTCGAGGGTGTCGCCGTCCTTGTC 2322 ||| | |||| || ||| | ||||| ||||| |||| || ||||| || | Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2323 GATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGC 2382 ||||| ||||| | | ||||||||||| |||||||| ||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2383 TGACCTGTTAGGG-GATATGAGGTCGAAGAATCGCTGATTCTGGCACTTGTACTTCCCTT 2441 ||| | || ||| ||| ||||||| ||||||| |||| || || ||| | ||| || Sbjct 172134441 AGACGTATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTT 172134499 Query 2442 CGAATTGCATAAGCACATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTT 2501 | | ||||| | ||||| |||||||| | | | | ||||| |||||| |||| || Sbjct 172134500 CCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAG 172134559 Query 2502 TAATATATTT--TTTATTGGTTGGGGTATT-----TAATTTGAGTATTTGTTCGAGTGCC 2554 |||||| | || || | | || ||| | ||| || |||||| || Sbjct 172134560 CGATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCAG---TTGTTCAAGATAA 172134616 Query 2555 TCTTCTTTGGATAGAGAGCATTTTGGGAAAGTGAGGAAATAATTTTTTGCATTTATAAGA 2614 | ||||||||||| | ||||||||||| | |||| ||| || || || ||||| | |||| Sbjct 172134617 TATTCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCATTGACAAGA 172134676 Query 2615 AATTTTC 2621 || |||| Sbjct 172134677 AACTTTC 172134683 Score = 95.1 bits (104), Expect = 2e-16 Identities = 206/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1717 TCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1776 |||| | ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1777 CTTGGTGTTGCTTCGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGTTTTAGATA 1836 ||| ||| |||| | | ||| || || ||||||||||| |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1837 GTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTTGAATACAC-CTTTGGGC 1895 || || || |||||| |||| ||| || | | || ||||| | || ||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1896 TT-AGATCAAGATGACCACACAAATAGTTGTGTGGACCTAATGACCTGGCCCACATGGTC 1954 || || || | ||||||||| | ||||| ||| || || || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1955 TTGCCTGTTCTACTATCACCCTCAATAACAAT--ACTAATCGGTCTCCAAGGCCGCGCAG 2012 || ||||| || ||||| || || | || ||| | |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 2013 CGGC 2016 |||| Sbjct 89851498 CGGC 89851501 >seq16 Length=188620566 Score = 109 bits (120), Expect = 1e-20 Identities = 189/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1752 CTTTAATTTGAATGGGCTTCCCGTACTTGGTGTT-GCTTCGCCAGTCTCTTTGGGCCCCC 1810 |||| || |||| || || | ||||||| || |||| ||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1811 ATAAACTCTTTAAAGTGTTTTAGATAGTGGGGATCTACGTCATCAATGACGTTATA--CC 1868 | || || || ||||||||| | | || || | |||| |||||| |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1869 AAGCATCATTTGAATACACCTTTGGGCTTAGATCAAGATGACCACACAAATAGTTGTGTG 1928 | |||| || || | ||| | || | | || | || ||||| ||||| || ||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1929 GACCTAATGACCTGGCCCACATGGTCTTGCCTGTTCTACTATCACCCTCAATAACAAT-- 1986 || ||||| || |||||||| ||||| || ||||| |||||| ||||| | || Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1987 ACTAATCGGTCTCCAAGGCCGCGCAGCG 2014 ||| | |||||| | || || | |||| Sbjct 2249096 ACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 202/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1717 TCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1776 |||| | ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1777 CTTGGTGTTGCTTCGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGTTTTAGATA 1836 ||| || |||| | || ||| || || ||||||||||| |||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1837 GTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGGCT 1896 || || || |||||| |||| ||| || ||| | ||||| | || ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1897 TAGATCAAGATGACCACACAAATAGTTGTGTGGACCTAATGACCTGGCCCACATGGTCTT 1956 | || | ||||||||| | ||||| ||| || || || || |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1957 GCCTGTTCTACTATCACCCTCAATAACAAT--ACTAATCGGTCTCCAAGGCCGCGCAGCG 2014 || ||| || || ||| | || | | ||| | |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCG 165527307 Query 2015 GC 2016 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8822252555640