Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014647.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq13 132 8e-28 seq11 123 4e-25 seq16 95.1 2e-16 >seq13 Length=197258317 Score = 132 bits (146), Expect = 8e-28 Identities = 214/303 (71%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1685 CCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || || |||||||| | |||||| |||||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTTTAAAGTGCTTGAGGAAG 1804 ||| || || ||||| | ||| | || ||||||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1805 TGCGGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGAC-TTTTGGGCT 1863 || || || |||||| |||| ||| || ||||||| |||| |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1864 T-AGATCCAAATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCCACATTGTCT 1922 | || |||| ||| ||||||| ||| |||||| || ||||| || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1923 TCCCAGTACGACTATCACCCTCAATTACTAT--ACTTTGAGGTCTATGAGGCCGCGCAGC 1980 | || || | ||||| || || | ||| ||||| ||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1981 GGC 1983 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 123 bits (136), Expect = 4e-25 Identities = 209/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1685 CCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || || |||||||| | |||||| |||||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1745 TTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTTTAAAGTGCTTGAGGAAG 1804 ||| | || ||||| | | ||| | || ||||||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1805 TGCGGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGACTTTTGGGCTT 1864 || || || |||||| |||| ||| || |||| ||| |||||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1865 AGATCCAAATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTC 1924 | |||| ||| ||||||| ||| |||||| || ||||| || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1925 CCAGTACGACTATCACCCTCAATTACTAT--ACTTTGAGGTCTATGAGGCCGCGCAGCGG 1982 | || | || ||| | || | | | ||||| ||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1983 C 1983 | Sbjct 165527305 C 165527305 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 2e-16 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 1719 CTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCA 1778 |||| || ||||| || || | ||||||| || | ||||||||| ||||| | || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1779 TAAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACG 1838 || || || |||| || | | || || | |||| |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1839 CGTCGTTACTATAGACTTTTGGGCTTAGATCCAAATGCCCACATAGGTAATTATGTGGGC 1898 | |||||| | || | || | | || |||| |||| || ||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1899 CTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCACCCTCAATTACTATACTTT 1958 | || || || |||||||||||||| || || | |||||| ||||||| ||| | Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1959 GAGGTCT 1965 ||||||| Sbjct 2249093 GAGGTCT 2249087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560