Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014707.1 Length=2736 Score E Sequences producing significant alignments: (Bits) Value seq16 104 4e-19 seq13 98.7 2e-17 seq11 84.2 4e-13 >seq16 Length=188620566 Score = 104 bits (114), Expect = 4e-19 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1705 CTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCA 1764 |||| || ||||| ||||| | ||||||| || ||||||||| || || | || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1765 TGAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATA--CCA 1822 || || || | || |||| | || |||| |||| |||||| | |||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1823 TGCATCATTTGAATATATCTTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGG 1882 |||| || || | | | | || ||| ||||||| |||| | ||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1883 TCCCAAAGACCTGGCCCACATTGTCTTGCCCGTACGACTATCACCCTCAATGACGATACT 1942 |||||| || || |||||||||||||| || || | |||||| ||||| | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1943 TTTAGGTCTCAATGGCCGCGCAGCG 1967 | |||||||||||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 202/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 1677 TTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTG 1736 ||||| || | ||| || || || |||||||| | || ||| || |||| ||| | Sbjct 89851207 TTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAG 89851266 Query 1737 TTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCTTTAGGTAGTGGGGG 1796 ||| ||||| | || | || || |||||||| | ||||| | ||| || || Sbjct 89851267 TTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTATTGTGGT 89851326 Query 1797 TCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATA-TCTTGCGACTC-AGAT 1854 || |||||| |||||||| || | || ||||| | | | || | || || | Sbjct 89851327 GGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGT 89851386 Query 1855 CTAAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCCG 1914 | | ||| ||||| | ||| || ||| ||||||||| || ||||||||||| || || | Sbjct 89851387 CCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTG 89851446 Query 1915 TACGACTATCACCCTCAATGACGAT--ACTTTTAGGTCTCAATGGCCGCGCAGCGG 1968 | | ||||| || |||| || ||||| ||||||| ||||||||||||| Sbjct 89851447 TCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 196/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 1677 TTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTG 1736 ||||| || | ||| || || || |||||||| | || ||| || ||||| ||| | Sbjct 165527597 TTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTATTTGCAG 165527538 Query 1737 TTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCTTTAGGTAGTGGGGG 1796 | | ||||| | | || | || || |||||||| | ||| | | ||| || || Sbjct 165527537 TAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTATTGTGGT 165527478 Query 1797 TCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATCTTGCGACTCAGATCT 1856 || |||||| |||||||| || || | ||||| | | || | | || Sbjct 165527477 GGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGTGGTCC 165527418 Query 1857 AAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCCGTA 1916 | ||| ||||| | ||| || ||| ||||||||| || ||||||||||| |||| || Sbjct 165527417 ATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTGCTTGTC 165527358 Query 1917 CGACTATCACCCTCAATGACGAT--ACTTTTAGGTCTCAATGGCCGCGCAGCGG 1968 | || ||| | |||| | ||||| ||||||| ||||||||||||| Sbjct 165527357 CTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8646259625696