Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014794.1 Length=2627 Score E Sequences producing significant alignments: (Bits) Value seq13 165 1e-37 seq11 149 1e-32 seq16 141 2e-30 >seq13 Length=197258317 Score = 165 bits (182), Expect = 1e-37 Identities = 259/367 (71%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 1567 CCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1626 ||||| ||||| || | ||||| ||| || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1627 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1686 ||||| || |||||||| | | || || || | || |||||||||| |||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCTTG 89851314 Query 1687 AAATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAAAAAAC--TC 1744 || ||||| |||| | |||||| |||| ||| || || || |||||||| || || | Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1745 GGGAATTGAAGTCCAGGTGTCCACTAAGGTAATTGTGTGGGCCTAATGCACGTGCCCACA 1804 |||| ||||| || |||| | ||| || ||| || || | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1805 TCGTCTTCCCTGTCCTCGAATCACCTTCCACTATGA-TACTAAC--TGGTCTGTCCGGCC 1861 | || || |||||||| ||||||| || |||||| || | || |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTT---CTATGATTATTGACTTTGGTCTCATCGGCC 89851491 Query 1862 GCGCAGCGGAACCTCCTCCAAAATAACCGTCCGCCCACTCTTGCATCTCATCGGGAACGT 1921 ||||||||| | |||||| || || ||||| | ||||| || || || || | Sbjct 89851492 GCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACAT 89851551 Query 1922 TAGTGAA 1928 ||||||| Sbjct 89851552 TAGTGAA 89851558 >seq11 Length=168460249 Score = 149 bits (164), Expect = 1e-32 Identities = 260/374 (70%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 1560 ACCCTCACCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTTAATTTGAACTGGCTT 1619 |||| | ||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1620 GCCGTATTTGCAATTTGACTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGC 1677 |||||||||||| | |||||||| | ||| || || || | || |||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGT-- 165527495 Query 1678 TTTAGCTTTAAATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAA 1737 || | || ||||| |||| | |||||| |||| ||| || || | | |||||| Sbjct 165527494 ----GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1738 AAAACTCGGGAATTGAAGTCCAGGTGTCCACTAAGGTAATTGTGTGGGCCTAATGCACGT 1797 || ||| ||| ||||| || |||| | ||| || ||| || || | | | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1798 GCCCACATCGTCTTCCCTGTCCTCGAATCACCTTCCACTATGA-TACTAAC--TGGTCTG 1854 |||||||| || || | |||||| |||| ||||| ||||| | | || |||||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTTTGGTCTC 165527322 Query 1855 TCCGGCCGCGCAGCGGAACCTCCTCCAAAATAACCGTCCGCCCACTCTTGCATCTCATCG 1914 |||||||||||||| | ||||| || || ||||| ||||||| || || Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1915 GGAACGTTAGTGAA 1928 || || |||||||| Sbjct 165527261 GGTACATTAGTGAA 165527248 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 338/506 (67%), Gaps = 14/506 (3%) Strand=Plus/Minus Query 1601 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCA 1660 |||| || ||||| || || | ||| ||||| |||| |||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1661 GAAGTTCTTTCCAGTGCTTTAGCTTTAAATATTGCGGTGCGACGTCATCAATGACGTTAT 1720 | | ||| |||||||| |||| || |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTA------AACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1721 ACTCCACTTCGTTTGAAAAAACTCGGGAATTGAAGTCCAGGTGTCCACTAAGGTAATTGT 1780 | ||||| ||||| || ||||| | ||| ||||| | | ||||| | ||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1781 GTGGGCCTAATGCACGTGCCCACATCGTCTTCCCTGTCCTCGAATCACCTTCCACTATGA 1840 || || |||| | ||||||||| ||||| || || || ||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1841 T--ACTAACTGGTCTGTCCGGCCGCGCAGCGGAACCTCCTCCAAAATAACCGTCCGCCCA 1898 | ||| | ||||| || || | |||| | | ||||||| | || ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1899 CTCTTGCATCTCATCGGGAACGTTAGTGAATGACGAGAGTTGAAACGGAGGGACCCACGG 1958 | |||||| | | || ||||| ||||| || || | | ||| ||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGG 2248982 Query 1959 TTCCGGAGCCTTTTGAAATATTCTGGTTGC-GTT-AGCAACCAGGTTGTGGTTCTGGAGG 2016 || | || |||||| | | | | | ||| ||| | || || ||| | | | Sbjct 2248981 AGCCTGTGCTGGTTGAAAAA--CCGTATCCAGTTGTGCATCAAGCTTTTGGAAATTAAAG 2248924 Query 2017 AAGAAATGTTGCGGTTGTTCTTCCCTTATTATTTGCAGAGCTGCCTCTGCTGAACCGGCG 2076 | ||| | || || || |||||| | || ||||| | |||| || | |||| ||| | Sbjct 2248923 AGGAAGTATTTTGGCTGCTCTTCCTTCATGATTTGTAATGCTGACTGTTTTGAATCGGAG 2248864 Query 2077 TTCAACGCCTTGGCATATGAATCGTT 2102 || | ||||| | ||||| ||||| Sbjct 2248863 TTTATAGCCTTTGTGTATGACTCGTT 2248838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8297465288464