Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq13 122 2e-24 seq11 114 2e-22 seq16 113 8e-22 >seq13 Length=197258317 Score = 122 bits (134), Expect = 2e-24 Identities = 213/305 (70%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1675 CCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1734 ||||| ||||| || | ||||||||||||||| ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1735 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGAAG 1794 || ||| || ||||| | ||| || || || || ||||| |||| || | | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1795 TGTGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACCTTT--GGGC 1852 ||||| | |||||| |||| ||| || | ||||||| | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1853 TAAGGTCCAGATTCCCGCATAAATAGTTATGTGGGCTTAAAGACCTAGCCCACATTGTTT 1912 | ||||||| || || |||| ||||||||| | ||||| || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1913 TTCCAGTAC--GACTATCTTCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCA 1968 | || || | || | ||| || || | ||| ||||| ||||||| ||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTT--TCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1969 GCGGC 1973 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 114 bits (126), Expect = 2e-22 Identities = 207/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1675 CCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1734 ||||| ||||| || | ||||||||||||||| ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1735 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGAAG 1794 || || || ||||| | | ||| || || || || ||||| |||| | | | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1795 TGTGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACCTTTGGGCTA 1854 ||||| | |||||| |||| ||| || ||||| ||| | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1855 AGGTCCAGATTCCCGCATAAATAGTTATGTGGGCTTAAAGACCTAGCCCACATTGTTTTT 1914 |||||| || || |||| ||||||||| | ||||| || |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1915 CCAGTACGACTATCTTCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1972 | || | || | | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1973 C 1973 | Sbjct 165527305 C 165527305 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 185/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1709 CTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1768 |||| || ||||| || || | ||| || |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1769 TGAATTCTTTAAAGTGTTTTAGGAAGTGTGGATCGACGTCATCAATGACGTTATA--CCA 1826 ||||| || ||||||||| | ||||| | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1827 AGCGTCGTTACTGTACACCTTTGGGCTAAGGTCCAGATTCCCGCATAAATAGTTATGTGG 1886 | |||||| | | ||| | || | | ||| | || || | |||||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1887 GCTTAAAGACCTAGCCCACATTGTTTTTCCAGTACGACTATCTTCCTCAATTACTATACT 1946 | || || || ||||||||||| ||||| || | ||| | ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1947 TTGAGGTCTCAGGGGCCGCGCAGCG 1971 |||||||||| || || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655859469840