Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014847.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 3e-14 seq11 80.6 5e-12 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 206/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1657 CCTGGATTGCAGAGGAAGATTGTTGGTATGCCCCCTTTAATGTGAACTGGCTTCCCGTAC 1716 ||||| ||||| || | ||||||||||||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1717 TTTGTGTCTGATTGCCAATCCCTTTGGGCCTCCATGAATTCTTTAAAGTGTTTCAGATAA 1776 || || || ||||||| ||| || | || || ||||| |||| || | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1777 TGCGGGTCAACATCATCTATAATGGTG-AACCACGCATCGTTTGAATACAC-TTTAGGGC 1834 || || | ||||| || ||| || || || | |||||||| | || ||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCA-ACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1835 TT-AGATCTAGATGCCCACACAAATGGTTATGTGGACCCAGTGATCTAGCCCACATCGTC 1893 || || || | ||| ||||| | | ||||||| |||| ||||| |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1894 TTCCCGGTACGACTATCTCCCTCAATCACTAT--ACTTTGTGGTCTATGTGGCCGCGCAG 1951 || || || | ||| | || || | ||| |||| |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 1952 CGGC 1955 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 161/239 (67%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1657 CCTGGATTGCAGAGGAAGATTGTTGGTATGCCCCCTTTAATGTGAACTGGCTTCCCGTAC 1716 ||||| ||||| || | ||||||||||||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1717 TTTGTGTCTGATTGCCAATCCCTTTGGGCCTCCATGAATTCTTTAAAGTGTTTCAGATAA 1776 || || || ||||||| | ||| || | || || ||||| |||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1777 TGCGGGTCAACATCATCTATAATGGTGAACCACGCATCGTTTGAATACACTTTAGGGCTT 1836 || || | ||||| || ||| || | || | |||||| | ||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1837 AGATCTAGATGCCCACACAAATGGTTATGTGGACCCAGTGATCTAGCCCACATCGTCTT 1895 | || | ||| ||||| | | ||||||| |||| ||||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604660301072