Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014894.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq11 96.9 6e-17 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 209/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1657 CCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1716 || || ||||| || | ||||||||||||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1717 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAG 1776 || ||| || ||||| | ||| || || || |||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1777 TGGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTTACTGTAGA-TCTTTGGAC- 1834 || || || |||||| |||| ||| || | ||||| | ||| | ||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1835 TAAGGTCTAGATGCCCACACAAATAGTTATGTGGACCCAGTGATCTAGCCCACATCGTCT 1894 | ||||| | ||| ||||| | ||||||||| |||| ||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1895 TCCCGGTACGACTATCTCCCTCAATCACTAT--ACTTTGTGGTCTAAGTGGCCGCGCAGC 1952 | || || | ||| | || || | ||| |||| |||||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAGC 89851498 Query 1953 GGC 1955 ||| Sbjct 89851499 GGC 89851501 Score = 77.0 bits (84), Expect = 6e-11 Identities = 158/235 (67%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 2222 TCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGATTTGACGTCGG 2281 |||||||| ||||| |||| || ||||| || | ||||| | |||| | Sbjct 172134341 TCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGA 172134400 Query 2282 AGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCA 2341 | ||||||||||| |||||||| ||||| || | | ||| | ||||| | Sbjct 172134401 AACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGA 172134460 Query 2342 GGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGATCTGGATGAGCACGTGCA 2401 |||| ||||||| |||| || || ||| ||||| || ||||| || | || || | Sbjct 172134461 GGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAA 172134520 Query 2402 GATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGATTTTAATATAtttttttGA 2456 ||||||| | | | ||| || |||||| ||||||| |||||| | |||| Sbjct 172134521 GATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGA 172134575 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1657 CCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1716 || || ||||| || | ||||||||||||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1717 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAG 1776 || || || ||||| | | ||| || || || |||||||| |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1777 TGGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTTACTGTAGATCTTTGGACTA 1836 || || || |||||| |||| ||| || || | ||| | ||| ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1837 AGGTCTAGATGCCCACACAAATAGTTATGTGGACCCAGTGATCTAGCCCACATCGTCTTC 1896 |||| | ||| ||||| | ||||||||| |||| ||||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1897 CCGGTACGACTATCTCCCTCAATCACTAT--ACTTTGTGGTCTAAGTGGCCGCGCAGCGG 1954 | || | || || | || | | | |||| |||||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCGG 165527306 Query 1955 C 1955 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607860249120