Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015043.1 Length=2679 Score E Sequences producing significant alignments: (Bits) Value seq13 163 5e-37 seq11 158 2e-35 seq16 156 7e-35 >seq13 Length=197258317 Score = 163 bits (180), Expect = 5e-37 Identities = 256/364 (70%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 1622 CCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1681 ||||| ||||| || | ||||| ||| || |||||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1682 TTGCAATTTGACTGCCAGTCTTTTTGTGCACCAATCAGCTCCTTCCAGTGCTTTAGCTTT 1741 ||||| || |||||||| | || ||| || ||||| | ||| ||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1742 AGATAATGCGGTGTGACATCATCGATGACGTTGTACAGGACATTATTGGAGTAGACCCTT 1801 || || || |||| | |||||||||| |||||| || | || ||| |||| || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1802 GGAT--TGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1859 | ||| ||||| ||| |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1860 TTGTCTTCCCTGTCCTTGAATCACCTTCGACGATGATACTCATAGGTCTCTCTGGCCGCG 1919 |||| || |||||||| ||||||| ||| | ||| || | | |||||| ||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1920 CAGCGGCACTCCTCCCAAAATAGTCATCGGCCCACTCTTGCATTTCGTCGGGAACGTTAG 1979 ||||||| ||||| || ||| ||||| | ||||| || || || || |||| Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAG 89851554 Query 1980 TGAA 1983 |||| Sbjct 89851555 TGAA 89851558 Score = 91.5 bits (100), Expect = 2e-15 Identities = 174/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 1737 GCTTTAGATAATGCGGTGTGACATCATCGATGACGTTGTA--CAGGACATTATTGGAGTA 1794 |||| | || || |||| | |||||||||| |||||| ||| | || || ||| | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAG--CGTTGTTTGAGAA 172133940 Query 1795 GACCCTTGGATTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGC 1854 ||| || |||| ||||| || |||| | || |||||| || | | | || Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1855 CCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACGATGATACT--CATAGGTCTCTCT 1912 ||||||||| || ||||| || |||| |||||| | ||| |||| | | |||||| | Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACC 172134057 Query 1913 GGCCGCGCAGCGGCACTCCTCCCAAAATAGTCATCGGCCCACTCTTGCATTTCGTCGGGA 1972 ||||| |||||||| | ||||| || ||| ||||| ||||||| || || | Sbjct 172134058 GGCCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGT 172134117 Query 1973 ACGTTAGTGAA 1983 || |||||||| Sbjct 172134118 ACATTAGTGAA 172134128 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 259/370 (70%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1616 CCCTCACCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTC 1675 ||| | ||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1676 CCGTACTTGCAATTTGACTGCCAGTCTTTTTGTGCACCAATCAGCTCCTTCCAGTGCTTT 1735 ||||| ||||| | |||||||| | | ||| || ||||| | ||| ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1736 AGCTTTAGATAATGCGGTGTGACATCATCGATGACGTTGTA--CAGGACATTATTGGAGT 1793 | || || || |||| | |||||||||| |||||| ||| | || || ||| Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAG--CGTTGTTTGAGA 165527438 Query 1794 AGACCCTTGGATTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAG 1853 |||| || ||| ||||| ||| |||| | || |||||| || || | | | Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1854 CCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACGATGATACTCATAGGTCTCTCTG 1913 |||||||||| || | |||||| |||| ||||| | ||| | | | |||||| | Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCG 165527318 Query 1914 GCCGCGCAGCGGCACTCCTCCCAAAATAGTCATCGGCCCACTCTTGCATTTCGTCGGGAA 1973 ||||||||||||| ||||| || ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1974 CGTTAGTGAA 1983 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 >seq16 Length=188620566 Score = 156 bits (172), Expect = 7e-35 Identities = 237/335 (71%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 1656 CTTTAATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGTGCACCAA 1715 |||| || ||||| || || | ||||||||| |||| ||||||||| |||||||||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1716 TCAGCTCCTTCCAGTGCTTTAGCTTTAGATAATGCGGTGTGACATCATCGATGACGTTGT 1775 | ||||||||||| |||| | | || || | || | ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1776 ACAGGACATTATTGGAGTAGACCCTTGGATTGAAGTCCAGATGTCCACTAAGATAATTAT 1835 | |||| || ||| | ||| | ||||| ||||| | || ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1836 GTGGGCCTAACGCACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACGATGA 1895 || || || | | |||||||||||||| || || |||||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1896 TACTCATAGGTCTCTCTGGCCGCGCAGCGGCACTC-CTCCCAAAATAGTCATCGGCCCAC 1954 | | ||||||| ||| || | ||| || || |||||| ||||| ||||| Sbjct 2249099 TTGACTGAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCCAT 2249041 Query 1955 TCTTGCATTTCGTCGGGAACGTTAGTGAAAGAGGA 1989 | |||||| | | || ||||| |||||||| || Sbjct 2249040 TTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8463862586960