Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015045.1 Length=2717 Score E Sequences producing significant alignments: (Bits) Value seq16 118 2e-23 seq13 105 1e-19 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 118 bits (130), Expect = 2e-23 Identities = 156/217 (72%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 1701 CTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAA 1760 |||| || ||||| || |||| ||| ||||| |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1761 TCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTTACATCATCAATGACGTTGT 1820 ||||| |||||||| |||| | | || ||| | || | |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1821 ACTCCACTAAGTTTGAATAAACCCTAGAATTGAAATCTAGGTGCCCGCTAAGATAATTAT 1880 | ||||| ||| || ||||| ||| ||| || |||| | || || | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1881 GTGGGCCTAACGCACGAGCCCACATTGTCTTCCCCGT 1917 || || || | | |||||||||||||| || || Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 246/367 (67%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 1667 CCTGGATTGCAGAGCACGATTGATGGAAGCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1726 ||||| ||||| || | ||||| ||| | || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1727 TTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTT 1786 ||||| || || ||||| | | |||||| ||||| || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1787 AGATAATGCGGGCTTACATCATCAATGACGTTGTACTCCACTAAGTTTGAATAAAC--CC 1844 || || || || || ||||| |||| |||||| || || |||||| | || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1845 TAGAATTGAAATCTAGGTGCCCGCTAAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1904 | |||| || | || || | | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1905 TTGTCTTCCCCGTCCGACTATCGCCCTCGATGATCA--AACTTATGGGCCTAACAGGCCG 1962 |||| || || |||| ||| | || ||||| | ||| | || || | ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1963 CGCAGCGGCACCTCTCCCGAAATACTCGTCAGCCCATTCTTGCATCTCGTCAGGAACATT 2022 ||||||||| | || || || || ||||||| ||||| || || || ||||| Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 2023 AGTGAAG 2029 ||||||| Sbjct 89851553 AGTGAAG 89851559 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 245/371 (66%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1661 CCCTCGCCTGGATTGCAGAGCACGATTGATGGAAGCCCGCCTTTAATTTGAACTGGCTTT 1720 ||| | ||||| ||||| |||| ||||| ||| | || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1721 CCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTT 1780 ||||||||||| | || ||||| | |||||| ||||| || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1781 AGCTTTAGATAATGCGGGCTTACATCATCAATGACGTTGTACTCCACTAAGTTTGAATAA 1840 | || || || || || ||||| |||| |||||| || | |||||| | Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1841 ACCCTAGAATTGAAATCTAGGTGCCCGCTAAGATAATTATGTGGGCCTAACGCACGAGCC 1900 || | ||| || | || || | | || |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1901 CACATTGTCTTCCCCGTCCGACTATCGCCCTCGATGAT--CAAACTTATGGGCCTAACAG 1958 |||||||| || | |||| || || | ||||| ||| | || || | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1959 GCCGCGCAGCGGCACCTCTCCCGAAATACTCGTCAGCCCATTCTTGCATCTCGTCAGGAA 2018 ||||||||||||| | || || || || ||||||||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 2019 CATTAGTGAAG 2029 ||||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8585460612784