Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015046.1 Length=2680 Score E Sequences producing significant alignments: (Bits) Value seq16 120 5e-24 seq13 118 2e-23 seq11 118 2e-23 >seq16 Length=188620566 Score = 120 bits (132), Expect = 5e-24 Identities = 213/309 (69%), Gaps = 10/309 (3%) Strand=Plus/Minus Query 1653 CTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAA 1712 |||| || ||||| || |||| ||| ||||| |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1713 TTAGCTCTTTCCAGTGCTTCATCTTTAGATATTGCGGACTGACATCATCGATGACGTTGT 1772 || || |||||||| || || | |||| || | || | ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1773 ACTCCGCTTTATTCGAGTAAACCCTAGAATTGAAGTCCAGGTGTCCGCTCAAATAATTAT 1832 | ||| | | || ||| ||||| ||| ||| ||||| | | || || |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1833 GTGGGCCTAACGCACGAGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCGACGATCA 1892 || || || | | |||||||| ||||| || || | |||||| || | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1893 --AACTGATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTCCCAAAATAATCATCGGCCCA 1950 |||| ||||||| || || | |||| | |||||||||||| ||||| Sbjct 2249099 TTGACTG--AGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1951 TTCTTGCAT 1959 || |||||| Sbjct 2249041 TTTTTGCAT 2249033 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 249/367 (68%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 1619 CCTGGATTGCAGAGCACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1678 ||||| ||||| || | ||||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1679 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAATTAGCTCTTTCCAGTGCTTCATCTTT 1738 ||||| || |||||||| | || ||| || ||||| | ||||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1739 AGATATTGCGGACTGACATCATCGATGACGTTGTACTCCGCTTTATTCGAGTAAAC--CC 1796 || ||||| || | |||||||||| |||||| || | | || ||| | || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1797 TAGAATTGAAGTCCAGGTGTCCGCTCAAATAATTATGTGGGCCTAACGCACGAGCCCACA 1856 | |||| ||||| || || | | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1857 TCGTCTTCCCCGTCCGACTATCACCCTCGACGATCA--AACTGATAGGTCTCTCCGGCCG 1914 | || || || |||| ||||| || | ||| | ||| | |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1915 CGCAGCGGCACCCCTCCCAAAATAATCATCGGCCCATTCTTGCATCTCGTCCGGGACGGC 1974 ||||||||| ||||| || ||| ||||||| ||||| || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1975 AGTGAAG 1981 ||||||| Sbjct 89851553 AGTGAAG 89851559 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 247/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 1619 CCTGGATTGCAGAGCACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1678 ||||| ||||| |||| ||||| ||| || || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1679 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAATTAGCTCTTTCCAGTGCTTCATCTTT 1738 ||||| | |||||||| | | ||| || ||||| | ||||||||||||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGA----- 165527489 Query 1739 AGATATTGCGGACTGACATCATCGATGACGTTGTACTCCGCTTTATTCGAGTAAACCCTA 1798 || ||||| || | |||||||||| |||||| || || || || ||| | || | Sbjct 165527488 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1799 GAATTGAAGTCCAGGTGTCCGCTCAAATAATTATGTGGGCCTAACGCACGAGCCCACATC 1858 ||| ||||| || || | | || |||||| || || | | |||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1859 GTCTTCCCCGTCCGACTATCACCCTCGACGAT--CAAACTGATAGGTCTCTCCGGCCGCG 1916 || || | |||| || ||| | | ||| ||| | |||||| |||||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCG 165527312 Query 1917 CAGCGGCACCCCTCCCAAAATAATCATCGGCCCATTCTTGCATCTCGTCCGGGACGGCAG 1976 ||||||| ||||| || ||| ||||||||||||| || || || || || Sbjct 165527311 CAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAG 165527252 Query 1977 TGAAG 1981 ||||| Sbjct 165527251 TGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8467062535008