Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015124.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-15 >seq13 Length=197258317 Score = 91.5 bits (100), Expect = 3e-15 Identities = 206/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1679 CCAGGATTGCAGAGGAAGATAGTGGGAATACCGCCTTTAATTTGAACAGGTTTCCCGTAC 1738 || || ||||| || | ||| || || || || ||||| | || || || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1739 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAA 1798 || ||| ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1799 TGCGGATCCACGTCATCGATGACGTTG-AACCAGGCATCATTACTGTACACCTTTGGAC- 1856 || || | ||||||||||| |||| || || | || || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAA-CGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1857 -TCAAATCTAAATGACCACATAAATAATTGTGTGGACCCAATGATCGGGCCCACATCGTC 1915 | | || | ||||||||||| || || ||| ||||| |||| |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1916 TTCCCCGTCCTGCTATCACCCTCTATGACTAT--ACTTACTGGTCTCAAAGGCCGCGCAG 1973 || || |||||| ||||| ||||||| ||| |||| |||||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 1974 CGGC 1977 |||| Sbjct 89851498 CGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659059417888