Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_015324.1
Length=2824
Score E
Sequences producing significant alignments: (Bits) Value
seq11 95.1 2e-16
seq13 93.3 8e-16
>seq11
Length=168460249
Score = 95.1 bits (104), Expect = 2e-16
Identities = 212/315 (67%), Gaps = 5/315 (2%)
Strand=Plus/Minus
Query 1745 ATGAAGATCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1804
||||| | ||| ||||||| ||||| || | ||| || || || || ||||| | ||
Sbjct 165527616 ATGAAAA-CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGAC 165527558
Query 1805 CTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTT 1862
|||||| |||||||| |||| || ||||| | ||| || || || || || || ||
Sbjct 165527557 TTGGCTTGCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTT 165527500
Query 1863 GAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACT 1922
||||| | | |||||| || | |||||| |||| ||| || ||| ||||
Sbjct 165527499 CCAGTGCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGA 165527440
Query 1923 ATATACTTTTGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCT 1982
| |||||| | | | || | ||| ||||| | || || || |||||||| ||
Sbjct 165527439 GAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCT 165527380
Query 1983 GGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATC 2042
||||| | |||||||| | | ||| |||| || | | || | |||||
Sbjct 165527379 TGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCAT 165527320
Query 2043 CGGCCGCGCAGCGGC 2057
|||||||||||||||
Sbjct 165527319 CGGCCGCGCAGCGGC 165527305
>seq13
Length=197258317
Score = 93.3 bits (102), Expect = 8e-16
Identities = 211/315 (67%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 1745 ATGAAGATCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1804
||||| | || ||||||| ||||| || | ||| || || || || ||||| | ||
Sbjct 89851187 ATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGAC 89851246
Query 1805 CTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGA 1864
|||||| ||||||| ||||| || ||||| | | || || || || || || ||
Sbjct 89851247 TTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCC 89851306
Query 1865 AGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTAT 1924
||||||| | |||||| || | |||||| |||| ||| || | | |||
Sbjct 89851307 AGTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366
Query 1925 ATACTTTTGGG-CTT-AGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCT 1982
| |||||| ||| || || | ||| ||||| | || || || |||||||| ||
Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426
Query 1983 GGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATC 2042
||||| | |||||| ||| | ||| | ||| || | || || | |||||
Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCAT 89851486
Query 2043 CGGCCGCGCAGCGGC 2057
|||||||||||||||
Sbjct 89851487 CGGCCGCGCAGCGGC 89851501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8924650844280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |