Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015324.1 Length=2824 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 2e-16 seq13 93.3 8e-16 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 212/315 (67%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 1745 ATGAAGATCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1804 ||||| | ||| ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 165527616 ATGAAAA-CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGAC 165527558 Query 1805 CTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTT 1862 |||||| |||||||| |||| || ||||| | ||| || || || || || || || Sbjct 165527557 TTGGCTTGCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTT 165527500 Query 1863 GAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACT 1922 ||||| | | |||||| || | |||||| |||| ||| || ||| |||| Sbjct 165527499 CCAGTGCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGA 165527440 Query 1923 ATATACTTTTGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCT 1982 | |||||| | | | || | ||| ||||| | || || || |||||||| || Sbjct 165527439 GAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCT 165527380 Query 1983 GGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATC 2042 ||||| | |||||||| | | ||| |||| || | | || | ||||| Sbjct 165527379 TGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCAT 165527320 Query 2043 CGGCCGCGCAGCGGC 2057 ||||||||||||||| Sbjct 165527319 CGGCCGCGCAGCGGC 165527305 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 8e-16 Identities = 211/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 1745 ATGAAGATCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAA 1804 ||||| | || ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 89851187 ATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGAC 89851246 Query 1805 CTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGA 1864 |||||| ||||||| ||||| || ||||| | | || || || || || || || Sbjct 89851247 TTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCC 89851306 Query 1865 AGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTAT 1924 ||||||| | |||||| || | |||||| |||| ||| || | | ||| Sbjct 89851307 AGTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1925 ATACTTTTGGG-CTT-AGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCT 1982 | |||||| ||| || || | ||| ||||| | || || || |||||||| || Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1983 GGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATC 2042 ||||| | |||||| ||| | ||| | ||| || | || || | ||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCAT 89851486 Query 2043 CGGCCGCGCAGCGGC 2057 ||||||||||||||| Sbjct 89851487 CGGCCGCGCAGCGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8924650844280