Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015397.1 Length=2566 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 3e-14 seq11 80.6 4e-12 seq16 78.8 2e-11 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 188/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATAT 1634 || || ||||| || | ||||| ||| || || ||||| | || ||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1635 TTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTTT 1694 |||||||| ||||| | | |||| || |||| | ||||||||||| |||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCTTG 89851314 Query 1695 AGGTATTGCGGTGGCAACGTCATCAATGACGTTGTATGCGACCTCGTGTTGAGTAGAC-- 1752 | |||||| ||||| | |||||| |||| |||||| | || |||| ||||| |||| Sbjct 89851315 AAGTATTGTGGTGG-TATGTCATCGATGATGTTGTAATCAACGTCGT-TTGAGAAGACTT 89851372 Query 1753 CCTCGGATTGAAATCGAGGTGTCCACTGAGATAATTGTGTGGACCTTTAGTTCGCGCCCA 1812 || |||| || | || |||| | || || ||| || || || ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1813 CGTTGTTTACCACGGCCTCGAATCCCCTTCCACGATTA 1850 | |||||| | | ||| ||||| | ||| | ||||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTA 89851470 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 4e-12 Identities = 112/156 (72%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATAT 1634 || || ||||| |||| ||||| ||| || || ||||| | || ||||| || ||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1635 TTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTTT 1694 ||||||| ||||| | |||||| || |||| | ||||||||||| || | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT------GCATG 165527490 Query 1695 AGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 | |||||| ||||| | |||||| |||| |||||| Sbjct 165527489 AAGTATTGTGGTGG-TATGTCATCGATGATGTTGTA 165527455 >seq16 Length=188620566 Score = 78.8 bits (86), Expect = 2e-11 Identities = 164/242 (68%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 1609 CTTTAATTTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAA 1668 |||| || ||||| || |||| || ||||| || ||||||||||| ||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1669 CGAGCTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGTGGCAACGTCATCAATGACGTTG 1728 | || ||||||| | |||| |||| || | ||||| |||||| ||||| Sbjct 2249273 GTAATTCCTTCCAGT------GTTTTAAACATTGTGG-GTTAACGTTATCAATAACGTTA 2249221 Query 1729 TATGCGACCTCGTGTTGAGTAGACCCTCGGATTGAAATCGAGGTGTCCACTGAGATAATT 1788 ||| | || |||| | ||| | ||| | ||||| || || | | ||||| | |||||| Sbjct 2249220 TATTCCACATCGT-TAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATT 2249162 Query 1789 GTGTGGACCTTTAGTTCGCGCCCACGTTGTTTACCACGGCCTCGAATCCCCTTCCACGAT 1848 ||| || | || |||||| |||| | | | || ||||| ||||| | || Sbjct 2249161 ATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTAT 2249102 Query 1849 TA 1850 || Sbjct 2249101 TA 2249100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8102268457536