Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015487.1 Length=2641 Score E Sequences producing significant alignments: (Bits) Value seq13 154 2e-34 seq16 150 3e-33 seq11 143 4e-31 >seq13 Length=197258317 Score = 154 bits (170), Expect = 2e-34 Identities = 257/367 (70%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 1578 CCAGGATTGCAAAGCACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1637 || || ||||| || | ||||| ||| || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1638 TTACAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTT 1697 || || || || ||||| | | ||| || ||||| || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1698 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTTGGTACACTCGA 1757 || || || |||| | |||||| |||| ||| || || || |||||| | | ||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1758 GCAT--TGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCCAAAGCACGAGCCCACA 1815 | | ||| |||| || |||| | || |||||| ||||||| | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1816 TTGTCTTCCCCGTTCTTGAATCACCTTCGACGATGAT--ACTTACTGGCCTCTCCGGCCG 1873 |||| || || || || ||||||| ||| | ||| || |||| ||| ||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1874 CGCAGAGGCACCACTTCCAAAATACTGATCAGCCCATTCTTGCATCTCGTCCGGGACGTT 1933 ||||| ||| |||||| || ||| ||||||| ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1934 AGTGAAG 1940 ||||||| Sbjct 89851553 AGTGAAG 89851559 Score = 95.1 bits (104), Expect = 2e-16 Identities = 239/360 (66%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 1693 GCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTTGGTACA 1752 |||| | || || |||| | |||||| |||| ||| || || | | |||| | | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1753 CTCGAGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCCAAAGCACGAGCCC 1812 || |||| |||| || |||| | || |||||| |||| | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1813 ACATTGTCTTCCCCGTTCTTGAATCACCTTCGACGATGATACTTAC--TGGCCTCTCCGG 1870 ||||||| || || ||||| |||| |||||| | ||| |||| || ||| ||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1871 CCGCGCAGAGGCACCACTTCCAAAATACTGATCAGCCCATTCTTGCATCTCGTCCGGGAC 1930 ||| |||| ||| | ||||| || ||| ||||||||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1931 GTTAGTGAAGGAAGAGAGGGGAAACGGCGGAACCCACGGTTCCGGAGCCTTTGCGAAGAT 1990 ||||||||| || | || || || ||||| || | | || || | ||| Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGAC 172134179 Query 1991 CCTCTCAAGGTTGGCCTTGAGATTGTGAAAATCTCTCACAAAGTCTCTAGGTTGTTCCTC 2050 || || |||||| |||| |||||| | | | ||||||||| |||||||| || Sbjct 172134180 TCTATCCAGGTTGAAGTTGATGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATC 172134239 >seq16 Length=188620566 Score = 150 bits (166), Expect = 3e-33 Identities = 237/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1612 CTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGATTGCCAGTCCTTTTGGGCCCCAA 1671 |||| || ||||| || || | |||||| || |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1672 TCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1731 ||||| |||||||| |||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1732 ACTCCACTTCGTTTTGGTACACTCGAGCATTGAAATCCAGGTGTCCACTAAGATAATTAT 1791 | ||||| ||||| | | || || ||| || || | | ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1792 GTGGGCCCAAAGCACGAGCCCACATTGTCTTCCCCGTTCTTGAATCACCTTCGACGATGA 1851 || ||||| | | |||||||||||||| || ||||||||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1852 T--ACTTACTGGCCTCTCCGGCCGCGCAGAGGCACCACTTCCAAAATACTGATCAGCCCA 1909 | ||| | || ||| || || | || | | | |||||| | ||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1910 TTCTTGCATCTCGTCCGGGACGTTAGTGAAGGAAGA 1945 || |||||| | | || ||||| ||||| ||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 143 bits (158), Expect = 4e-31 Identities = 323/482 (67%), Gaps = 10/482 (2%) Strand=Plus/Minus Query 1571 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTT 1630 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1631 GCCGTACTTACAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTT 1690 |||||| || || | || ||||| | ||| || ||||| || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1691 TAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTTGGTA 1750 | || || || |||| | |||||| |||| ||| || || | | |||| | | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1751 CACTCGAGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCCAAAGCACGAGC 1810 ||| ||| |||| || |||| | || |||||| ||||||| | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1811 CCACATTGTCTTCCCCGTTCTTGAATCACCTTCGACGATGAT--ACTTACTGGCCTCTCC 1868 ||||||||| || | || || |||| ||||| | ||| | |||| ||| ||| | Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATC 165527319 Query 1869 GGCCGCGCAGAGGCACCACTTCCAAAATACTGATCAGCCCATTCTTGCATCTCGTCCGGG 1928 |||||||||| ||| ||||| || ||| ||||||||||||| || || || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1929 ACGTTAGTGAAGGAAGAGAGGGGAAACGGCGGAACCCACGGTTCCGGAGCCTTTGCGAAG 1988 || ||||||||| || | || || || ||||| || | | || || | || Sbjct 165527258 ACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAG 165527199 Query 1989 ATCCTCTCAAGGTTGGCCTTGAGATTGTGAAAATCTCTCACAAAGTCTCTAGGTTGTTCC 2048 | || || |||||| |||| |||||| | | || ||||||||| |||||||| Sbjct 165527198 ACTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCA 165527139 Query 2049 TC 2050 || Sbjct 165527138 TC 165527137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8342264561136