Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015488.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq13 134 2e-28 seq16 132 8e-28 seq11 132 8e-28 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 214/304 (70%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 1561 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1620 || || ||||| || | ||| || || || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1621 TTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAGATAA 1680 |||||||| || ||||| | ||| || || || |||||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1681 TGCGGATCAACGTCATCGATGACGTTATA--CCACGCATCGTTGGAGTA----TATCCTT 1734 || || | ||||||||||| ||| || | ||| ||||| ||| | | | ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1735 GGGTTGAGATCGATATGACCACATAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATT 1794 ||||| || ||||||||||||| || || || |||| | || ||||| ||| Sbjct 89851379 --CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436 Query 1795 GTTTTGCCCGTTCTTGATGGACCTTCAACAATGATTGATATCGGTCTCAATGGCCGCGCA 1854 ||||| || || || || || ||| | || ||||| | ||||||| ||||||||| Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCA 89851496 Query 1855 GCGG 1858 |||| Sbjct 89851497 GCGG 89851500 Score = 95.1 bits (104), Expect = 2e-16 Identities = 489/771 (63%), Gaps = 18/771 (2%) Strand=Plus/Plus Query 1692 GTCATCGATGACGTTATACCACGCATCGTTGGAGTATATCCTTGGGTTGAGATCGATATG 1751 ||||||||||| ||| || || | ||| ||| | | || |||||| || | || Sbjct 172133905 GTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAATTG 172133964 Query 1752 ACCACATAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATTGTTTTGCCCGTTCTTGA 1811 ||||||| || || || |||| || ||||| ||||||||||| ||||| || Sbjct 172133965 -CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGA 172134023 Query 1812 TGGACCTTCAACAATGATTGATATCGGTCTCAATGGCCGCGCAGCGGAATCGGA----AA 1867 |||||| | || | ||| | ||||||| ||||| ||||||| | | | || Sbjct 172134024 ATTACCTTCTATGATTACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTT-GTATACCAA 172134082 Query 1868 TATTTTCGTTAACCCAATCGGACATGATTTCTGGGACATTGTTGAACGTGGATAATTGAA 1927 | | | |||| || || | |||| | ||||| |||| | ||||| | | Sbjct 172134083 AGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAGCTTGATAACGGGA 172134142 Query 1928 ACGGAGAAACCCATGGTTCTGGTGGTTTATGAAATATTTTCGTTATGTTGGACACCAGAT 1987 | ||| | |||||||| ||| ||| | | | | | | | | |||| | | | Sbjct 172134143 ATGGACATACCCATGGAGCTGTAGGTATTTCATAGACTCTATCCAGGTTGAAGTTGATGT 172134202 Query 1988 TGTGATATTGAAGGACGAAATGTTTAGGTTGTTGCTCTTTAATAATCTGCATAGCCTCTT 2047 |||||| || | || || | | | ||||||| ||| |||||| ||||| ||||| | Sbjct 172134203 TGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATCTCTAATAACCTGCAATGCCTCGT 172134262 Query 2048 CTGCAGATTCTGCATTTAAC-GCCCTTGCATATGAATCGTTAGCAG---ATTGCTGACCT 2103 || || | |||| | || || | |||| ||| | | | | |||| | Sbjct 172134263 CTTTAGCGT-TGCACACCAGTGCTCTGCCGTATGTTGTGTTGGGATCGAAATTCTGATTT 172134321 Query 2104 CCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCAATTGTATCGCCGTCCTTG 2163 | | | |||| | || | ||||||| ||||| || ||| ||| ||||| || Sbjct 172134322 C---TGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTC 172134378 Query 2164 TCGATGTAGGACTTGACGTCGGAGCTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGT 2223 | ||||| |||| | | || || ||||| ||| |||| ||||| || | Sbjct 172134379 TGCATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATT 172134438 Query 2224 GCTGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCT 2283 | ||| | ||||| | | ||| |||||||| ||| || | | ||||| | Sbjct 172134439 TCAGACGTATTTGGGTGATTGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTT 172134498 Query 2284 TCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGGAGTTCCGTGCATATT 2343 || | ||| || | || ||||||||||| | | | ||| || ||||| |||| || Sbjct 172134499 TCCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATA 172134558 Query 2344 TTGAT-GAACTTCTTGTTAACT---GGAGTTGATAGGTTTTGCAATTGGGAAAGAGCTTC 2399 ||| | | |||| | || ||| ||| ||| || || ||| |||| | Sbjct 172134559 GCGATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATA 172134618 Query 2400 TTCTTTTGTTAGAGAGCATTTGGGGTATGTGAGGAAATAGTTTTTGGCATT 2450 |||||| | || | ||||||| |||||||||| ||| ||||| |||||||| Sbjct 172134619 TTCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCATT 172134669 >seq16 Length=188620566 Score = 132 bits (146), Expect = 8e-28 Identities = 192/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 1595 CTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1654 |||| || |||| || |||| ||| ||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1655 TGAACTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTCATCGATGACGTTATACCACG 1714 || || || |||| || | | | || || | ||||| ||| || |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1715 CATCGTTGGAGTATATCCTTGGGTTGAGATCGATATGACCACATAAATAATTGTGAGGGC 1774 ||||||| ||| | | | | || || | || | || ||||| ||||||||| || | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1775 CCAGACTTCGGGCCCATATTGTTTTGCCCGTTCTTGATGGACCTTCAACAATGATTGATA 1834 ||| || ||||| ||||| || || |||||||| |||||||| || ||||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1835 TCGGTCTCAATGGCCGCGCAGCGGAATCGGA 1865 ||||||||||| || | |||| ||||| Sbjct 2249093 GAGGTCTCAATGGGCGTGAAGCGCTGTCGGA 2249063 >seq11 Length=168460249 Score = 132 bits (146), Expect = 8e-28 Identities = 208/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 1561 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1620 || || ||||| || | ||| || || || |||||||| | || ||||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1621 TTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAGATAA 1680 ||||||| || ||||| | | ||| || || || |||||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1681 TGCGGATCAACGTCATCGATGACGTTATACCACGCATCGTTGGAGTATATCCTTGGGTTG 1740 || || | ||||||||||| ||| || || | ||| ||| | | || |||| Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1741 AGATCGATATGACCACATAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATTGTTTTG 1800 | || ||||||||||||| || || || |||| | || ||||| ||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1801 CCCGTTCTTGATGGACCTTCAACAATGATTGATATCGGTCTCAATGGCCGCGCAGCGG 1858 | || || || ||||| | || |||| | ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246266119696