Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_015488.1
Length=2611
Score E
Sequences producing significant alignments: (Bits) Value
seq13 134 2e-28
seq16 132 8e-28
seq11 132 8e-28
>seq13
Length=197258317
Score = 134 bits (148), Expect = 2e-28
Identities = 214/304 (70%), Gaps = 10/304 (3%)
Strand=Plus/Plus
Query 1561 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1620
|| || ||||| || | ||| || || || |||||||| | || ||||||| |||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1621 TTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAGATAA 1680
|||||||| || ||||| | ||| || || || |||||||| ||||||| | ||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320
Query 1681 TGCGGATCAACGTCATCGATGACGTTATA--CCACGCATCGTTGGAGTA----TATCCTT 1734
|| || | ||||||||||| ||| || | ||| ||||| ||| | | | |||
Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378
Query 1735 GGGTTGAGATCGATATGACCACATAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATT 1794
||||| || ||||||||||||| || || || |||| | || ||||| |||
Sbjct 89851379 --CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436
Query 1795 GTTTTGCCCGTTCTTGATGGACCTTCAACAATGATTGATATCGGTCTCAATGGCCGCGCA 1854
||||| || || || || || ||| | || ||||| | ||||||| |||||||||
Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCA 89851496
Query 1855 GCGG 1858
||||
Sbjct 89851497 GCGG 89851500
Score = 95.1 bits (104), Expect = 2e-16
Identities = 489/771 (63%), Gaps = 18/771 (2%)
Strand=Plus/Plus
Query 1692 GTCATCGATGACGTTATACCACGCATCGTTGGAGTATATCCTTGGGTTGAGATCGATATG 1751
||||||||||| ||| || || | ||| ||| | | || |||||| || | ||
Sbjct 172133905 GTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAATTG 172133964
Query 1752 ACCACATAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATTGTTTTGCCCGTTCTTGA 1811
||||||| || || || |||| || ||||| ||||||||||| ||||| ||
Sbjct 172133965 -CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGA 172134023
Query 1812 TGGACCTTCAACAATGATTGATATCGGTCTCAATGGCCGCGCAGCGGAATCGGA----AA 1867
|||||| | || | ||| | ||||||| ||||| ||||||| | | | ||
Sbjct 172134024 ATTACCTTCTATGATTACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTT-GTATACCAA 172134082
Query 1868 TATTTTCGTTAACCCAATCGGACATGATTTCTGGGACATTGTTGAACGTGGATAATTGAA 1927
| | | |||| || || | |||| | ||||| |||| | ||||| | |
Sbjct 172134083 AGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAGCTTGATAACGGGA 172134142
Query 1928 ACGGAGAAACCCATGGTTCTGGTGGTTTATGAAATATTTTCGTTATGTTGGACACCAGAT 1987
| ||| | |||||||| ||| ||| | | | | | | | | |||| | | |
Sbjct 172134143 ATGGACATACCCATGGAGCTGTAGGTATTTCATAGACTCTATCCAGGTTGAAGTTGATGT 172134202
Query 1988 TGTGATATTGAAGGACGAAATGTTTAGGTTGTTGCTCTTTAATAATCTGCATAGCCTCTT 2047
|||||| || | || || | | | ||||||| ||| |||||| ||||| ||||| |
Sbjct 172134203 TGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATCTCTAATAACCTGCAATGCCTCGT 172134262
Query 2048 CTGCAGATTCTGCATTTAAC-GCCCTTGCATATGAATCGTTAGCAG---ATTGCTGACCT 2103
|| || | |||| | || || | |||| ||| | | | | |||| |
Sbjct 172134263 CTTTAGCGT-TGCACACCAGTGCTCTGCCGTATGTTGTGTTGGGATCGAAATTCTGATTT 172134321
Query 2104 CCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCAATTGTATCGCCGTCCTTG 2163
| | | |||| | || | ||||||| ||||| || ||| ||| ||||| ||
Sbjct 172134322 C---TGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTC 172134378
Query 2164 TCGATGTAGGACTTGACGTCGGAGCTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGT 2223
| ||||| |||| | | || || ||||| ||| |||| ||||| || |
Sbjct 172134379 TGCATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATT 172134438
Query 2224 GCTGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCT 2283
| ||| | ||||| | | ||| |||||||| ||| || | | ||||| |
Sbjct 172134439 TCAGACGTATTTGGGTGATTGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTT 172134498
Query 2284 TCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGGAGTTCCGTGCATATT 2343
|| | ||| || | || ||||||||||| | | | ||| || ||||| |||| ||
Sbjct 172134499 TCCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATA 172134558
Query 2344 TTGAT-GAACTTCTTGTTAACT---GGAGTTGATAGGTTTTGCAATTGGGAAAGAGCTTC 2399
||| | | |||| | || ||| ||| ||| || || ||| |||| |
Sbjct 172134559 GCGATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATA 172134618
Query 2400 TTCTTTTGTTAGAGAGCATTTGGGGTATGTGAGGAAATAGTTTTTGGCATT 2450
|||||| | || | ||||||| |||||||||| ||| ||||| ||||||||
Sbjct 172134619 TTCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCATT 172134669
>seq16
Length=188620566
Score = 132 bits (146), Expect = 8e-28
Identities = 192/271 (71%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 1595 CTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1654
|||| || |||| || |||| ||| ||||| |||| ||||||||| ||||| || || |
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1655 TGAACTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTCATCGATGACGTTATACCACG 1714
|| || || |||| || | | | || || | ||||| ||| || |||||||| |
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214
Query 1715 CATCGTTGGAGTATATCCTTGGGTTGAGATCGATATGACCACATAAATAATTGTGAGGGC 1774
||||||| ||| | | | | || || | || | || ||||| ||||||||| || |
Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154
Query 1775 CCAGACTTCGGGCCCATATTGTTTTGCCCGTTCTTGATGGACCTTCAACAATGATTGATA 1834
||| || ||||| ||||| || || |||||||| |||||||| || |||||
Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094
Query 1835 TCGGTCTCAATGGCCGCGCAGCGGAATCGGA 1865
||||||||||| || | |||| |||||
Sbjct 2249093 GAGGTCTCAATGGGCGTGAAGCGCTGTCGGA 2249063
>seq11
Length=168460249
Score = 132 bits (146), Expect = 8e-28
Identities = 208/298 (70%), Gaps = 0/298 (0%)
Strand=Plus/Minus
Query 1561 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1620
|| || ||||| || | ||| || || || |||||||| | || ||||||| ||||||
Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544
Query 1621 TTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAGATAA 1680
||||||| || ||||| | | ||| || || || |||||||| ||||| | | ||
Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484
Query 1681 TGCGGATCAACGTCATCGATGACGTTATACCACGCATCGTTGGAGTATATCCTTGGGTTG 1740
|| || | ||||||||||| ||| || || | ||| ||| | | || ||||
Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424
Query 1741 AGATCGATATGACCACATAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATTGTTTTG 1800
| || ||||||||||||| || || || |||| | || ||||| |||||||||
Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364
Query 1801 CCCGTTCTTGATGGACCTTCAACAATGATTGATATCGGTCTCAATGGCCGCGCAGCGG 1858
| || || || ||||| | || |||| | ||||||| |||||||||||||
Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8246266119696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |