Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015490.1 Length=2640 Score E Sequences producing significant alignments: (Bits) Value seq13 113 8e-22 seq11 107 3e-20 >seq13 Length=197258317 Score = 113 bits (124), Expect = 8e-22 Identities = 206/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1567 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTAT 1626 || || ||||| || | ||| || || || || ||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1627 TTGCAGTTTGATGGCCAATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGATAA 1686 |||||||| || |||||| || || || || || ||||| ||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1687 TGCGGATCTACGTCATCGATGACGTTATACCATGCATCATTGGAGTATA--TCCTCGGGT 1744 || || || ||||||||||| ||| || | || || ||| | | | || | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1745 TGAGATCTATATGTCCACATAGATAATTGTGAGGGCCCAGGCTACGGGCCCATATTGTTT 1804 |||| || ||||| ||||||| || || || |||| | ||||| ||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1805 TGCCCGTTCTTGATGGTCCTTCAACAATGATTGATATAGGTCTCAACGGCCGCGCAGCGG 1864 | || || || || | ||| | || ||||| | ||||||| |||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1865 C 1865 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1567 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTAT 1626 || || ||||| || | ||| || || || || ||||| | || ||||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1627 TTGCAGTTTGATGGCCAATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGATAA 1686 ||||||| || |||||| | || || || || || ||||| ||||| ||| || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1687 TGCGGATCTACGTCATCGATGACGTTATACCATGCATCATTGGAGTATATCCTCGGGTTG 1746 || || || ||||||||||| ||| || || | || ||| | | | |||| Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1747 AGATCTATATGTCCACATAGATAATTGTGAGGGCCCAGGCTACGGGCCCATATTGTTTTG 1806 | || ||||| ||||||| || || || |||| | ||||| ||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1807 CCCGTTCTTGATGGTCCTTCAACAATGATTGATATAGGTCTCAACGGCCGCGCAGCGGC 1865 | || || || |||| | || |||| | ||||||| ||||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8339064613088