Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015627.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq16 159 6e-36 seq13 158 2e-35 seq11 152 8e-34 >seq16 Length=188620566 Score = 159 bits (176), Expect = 6e-36 Identities = 219/302 (73%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 1556 CTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTA 1615 |||| || ||||| || || | |||||| || |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1616 TGAGTTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCAATGTCATCAATGACGTTAT 1675 | ||| |||||||| |||| || | || || || || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTA------AACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1676 ACTCCACATCATTCGAGAAGACCTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTAT 1735 | |||||||| || ||||| ||| | | ||| ||||| | | |||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1736 GTGGGCCTAAAGCACGCGCCCACATGGTTTTGCCTGTTCGAGAATCACCTTCAATTATGA 1795 || || || | | |||||||| || || || |||| ||||||||||||||||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1796 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCCGA-CCAAAATACTCATCGGCCC 1852 | ||| ||||||| || || | ||| | || || |||||| ||||| |||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 1853 AT 1854 || Sbjct 2249042 AT 2249041 >seq13 Length=197258317 Score = 158 bits (174), Expect = 2e-35 Identities = 258/369 (70%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 1520 CTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGT 1579 ||||||| ||||| || | ||||| ||||||||| ||||| | || ||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1580 ACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAGCT 1639 | || ||||| || ||||| | ||| || || || | |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1640 TTAAATAATGCGGAGCAATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGAC-- 1697 | || || || || | |||||||| |||| ||| || || || || || |||||||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1698 CTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGCGCCCA 1757 || |||| ||| | ||||||| | || |||||| || |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1758 CATGGTTTTGCCTGTTCGAGAATCACCTTCAATTATGAT--ACTAATAGGTCTCTCCGGC 1815 ||| ||||| ||||| | ||||||| ||| || || || ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1816 CGCGCAGCGGAACTCCGACCAAAATACTCATCGGCCCATGAACTCATCTCGTCTGGAACG 1875 |||||||||| | ||||| || ||| |||||| | || || ||||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1876 TTAGTAAAG 1884 ||||| ||| Sbjct 89851551 TTAGTGAAG 89851559 Score = 84.2 bits (92), Expect = 4e-13 Identities = 135/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 1637 GCTTTAAATAATGCGGAGCAATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGA 1696 |||| || || || || | |||||||| |||| ||| || || | | || ||||||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1697 CCTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGCGCCC 1756 | || |||| ||| | || |||| | || |||||| || | | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1757 ACATGGTTTTGCCTGTTCGAGAATCACCTTCAATTATGATACTAA--TAGGTCTCTCCGG 1814 |||| ||||||||||||| |||| |||||| || || |||| | | |||||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1815 CCGCGCAGCGG 1825 ||| ||||||| Sbjct 172134060 CCGTGCAGCGG 172134070 >seq11 Length=168460249 Score = 152 bits (168), Expect = 8e-34 Identities = 259/374 (69%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 1516 CCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTG 1575 ||| ||||||| ||||| |||| ||||| ||||||||| ||||| | || ||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1576 CCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTT 1635 ||||| || |||| || ||||| | | ||| || || || | |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1636 AGCTTTAAATAATGCGGAGCAATGTCATCAATGACGTTATACTCCACATCATTCGAGAAG 1695 || | || || || || | |||||||| |||| ||| || || | | || |||||| Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1696 ACCTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGCGCC 1755 || || ||| ||| | ||||||| | || |||||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1756 CACATGGTTTTGCCTGTTCGAGAATCACCTTCAATTATGAT-----ACTAATAGGTCTCT 1810 ||||| ||||||| ||| | |||| ||||| ||||||| ||| | |||||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCTCA 165527321 Query 1811 CCGGCCGCGCAGCGGAACTCCGACCAAAATACTCATCGGCCCATGAACTCATCTCGTCTG 1870 |||||||||||||| ||||||| || ||| |||||| || || |||| Sbjct 165527320 TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1871 GAACGTTAGTAAAG 1884 | || ||||| ||| Sbjct 165527260 GTACATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8214266639216