Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015962.1 Length=2625 Score E Sequences producing significant alignments: (Bits) Value seq16 167 4e-38 seq13 161 2e-36 seq11 158 2e-35 >seq16 Length=188620566 Score = 167 bits (184), Expect = 4e-38 Identities = 314/455 (69%), Gaps = 14/455 (3%) Strand=Plus/Minus Query 1599 CTTTAATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAA 1658 |||| || ||||| || || | ||||||||| |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1659 GGAGCTCTTTCCAGTGCTTCAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTAT 1718 | | || |||||||| || ||| |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1719 ATTCCACTTCGTTCGAGTAAACCTTTGAGTTGAAGTCCAGGTGTCCACTCAGATAATTAT 1778 ||||||| ||||| ||| ||||| | | || ||||| | | ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1779 GTGGGCCTAAGGCACGAGCCCACATCGTCTTGCCTGTTCTTGAATCACCCTCAACTATGA 1838 || || || | | |||||||| ||||| || |||||||||||||| |||| ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1839 --GACTTATTGGACGATTTGGCCGCGCAGCGGAATCAAGCCCAAAATAACTATCGGCCCA 1896 |||| | || | ||| || | |||| || ||||||| ||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1897 CTCTTGCATCTCGTCCGGAACGTTAGTGAAAGAGGAGA-GACGAAACGGAGGGACCCACG 1955 | |||||| | | || ||||| |||||||| || | | || | ||| ||||| | Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCG-TATGGACTTACCCATG 2248983 Query 1956 GTTCCGGAGCCTTCTTGAATATTCTGGTTGCGTT-AGCAACCAGGTTGTGGTGTTGAAGG 2014 | || | | || ||||| | | | ||| ||| | || || ||| | || | Sbjct 2248982 GAGCCTGTG-CTGGTTGAAAAACCGTATCCAGTTGTGCATCAAGCTTTTGGAAATTAAAG 2248924 Query 2015 AAGAAATGTTGTGGTTGTTCTTCCTTTATGATTTG 2049 | ||| | || ||| || |||||||| |||||||| Sbjct 2248923 AGGAAGTATTTTGGCTGCTCTTCCTTCATGATTTG 2248889 >seq13 Length=197258317 Score = 161 bits (178), Expect = 2e-36 Identities = 257/366 (70%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1565 CCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1624 ||||| ||||| || | ||||| ||| || |||||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1625 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAGCTCTTTCCAGTGCTTCAACTTT 1684 ||||| || |||||||| | || ||| || |||| | |||||||||||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTTG 89851314 Query 1685 AAGTATTGCGGAGAGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTAAACCTTT 1744 |||||||| || | | |||||| |||| ||| || || || ||||| ||| | || ||| Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1745 --GAGTTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAAGGCACGAGCCCACA 1802 |||| ||||| || |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1803 TCGTCTTGCCTGTTCTTGAATCACCCTCAACTATGA--GACTTATTGGACGATTTGGCCG 1860 | || || ||||| || ||||||| || | || | |||| |||| | | ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1861 CGCAGCGGAATCAAGCCCAAAATAACTATCGGCCCACTCTTGCATCTCGTCCGGAACGTT 1920 |||||||| | || ||||| || ||| ||||| | ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1921 AGTGAA 1926 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 91.5 bits (100), Expect = 2e-15 Identities = 171/248 (69%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 1681 CTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTAAAC 1740 ||| |||||||| || | | |||||| |||| ||| || || | | ||| ||| | || Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943 Query 1741 CTTTGAGTTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAAGGCACGAGCCCA 1800 ||| ||||| ||||| || |||| | || |||||| || | || | ||||| Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002 Query 1801 CATCGTCTTGCCTGTTCTTGAATCACCCTCAACTATGA--GACTTATTGGACGATTTGGC 1858 ||| || ||||||||||| |||| ||| || | || | |||| |||| | ||| Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACT--TTGGTCTCACCGGC 172134060 Query 1859 CGCGCAGCGGAATCAAGCCCAAAATAACTATCGGCCCACTCTTGCATCTCGTCCGGAACG 1918 || ||||||| | | ||||| || ||| ||||| ||||||| || || | || Sbjct 172134061 CGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACA 172134120 Query 1919 TTAGTGAA 1926 |||||||| Sbjct 172134121 TTAGTGAA 172134128 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 260/374 (70%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 1558 ACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTT 1617 |||| | ||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1618 CCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAGCTCTTTCCAGTGCTT 1677 ||||| ||||| | |||||||| | | ||| || |||| | |||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG--- 165527494 Query 1678 CAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTA 1737 | | |||||||| || | | |||||| |||| ||| || || | | ||| ||| | Sbjct 165527493 ---CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1738 AACCTTTGAGTTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAAGGCACGAGC 1797 || ||| |||| ||||| || |||| | || |||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1798 CCACATCGTCTTGCCTGTTCTTGAATCACCCTCAACTATGA-----GACTTATTGGACGA 1852 |||||| || |||| ||| || |||| ||| | ||||| |||| |||| | Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCTC 165527322 Query 1853 TTTGGCCGCGCAGCGGAATCAAGCCCAAAATAACTATCGGCCCACTCTTGCATCTCGTCC 1912 | ||||||||||||| | || ||||| || ||| ||||| ||||||| || || Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1913 GGAACGTTAGTGAA 1926 || || |||||||| Sbjct 165527261 GGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8291065392368